Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   R0Q54_RS13630 Genome accession   NZ_CP136992
Coordinates   2558082..2558723 (+) Length   213 a.a.
NCBI ID   WP_014478974.1    Uniprot ID   -
Organism   Bacillus subtilis strain J46     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2553082..2563723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0Q54_RS13600 (R0Q54_13600) ydfE 2554277..2554900 (-) 624 WP_003243530.1 flavin reductase family protein -
  R0Q54_RS13605 (R0Q54_13605) ydfF 2554990..2555670 (+) 681 WP_003244115.1 ArsR/SmtB family transcription factor -
  R0Q54_RS13610 (R0Q54_13610) ydfG 2555750..2556193 (-) 444 WP_003242768.1 carboxymuconolactone decarboxylase family protein -
  R0Q54_RS13615 (R0Q54_13615) - 2556279..2556458 (-) 180 WP_010886421.1 hypothetical protein -
  R0Q54_RS13620 (R0Q54_13620) - 2556455..2556598 (-) 144 WP_003243880.1 hypothetical protein -
  R0Q54_RS13625 (R0Q54_13625) ydfH 2556866..2558089 (+) 1224 WP_259607232.1 two-component system sensor histidine kinase YdfH -
  R0Q54_RS13630 (R0Q54_13630) vraR 2558082..2558723 (+) 642 WP_014478974.1 two-component system response regulator YdfI Regulator
  R0Q54_RS13635 (R0Q54_13635) pleJ 2558839..2561013 (+) 2175 WP_003243548.1 MMPL family transporter -
  R0Q54_RS13640 (R0Q54_13640) cesA 2561425..2562327 (-) 903 WP_003242638.1 carboxylesterase -
  R0Q54_RS13645 (R0Q54_13645) ydfK 2562529..2563218 (-) 690 WP_003242513.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24004.93 Da        Isoelectric Point: 5.1938

>NTDB_id=817367 R0Q54_RS13630 WP_014478974.1 2558082..2558723(+) (vraR) [Bacillus subtilis strain J46]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRSETQLTEKEVIVLKAI
AKGLKSKAIAFDLDVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=817367 R0Q54_RS13630 WP_014478974.1 2558082..2558723(+) (vraR) [Bacillus subtilis strain J46]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTCAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAGTGAGACGCAGCTGACGGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGACGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.264

99.531

0.371