Detailed information NTG0817367

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: QAP01_RS07125
• Genome accession: NZ_CP122950
• Coordinates: 1498087..1499142 (-)
• Length: 351 a.a.
• NCBI ID: WP_286498805.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BS28-1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1493087..1504142

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QAP01_RS07100 (QAP01_07100)	-	1493639..1495051 (-)	1413	WP_286498179.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
QAP01_RS07105 (QAP01_07105)	comB10	1495121..1496257 (-)	1137	WP_286498180.1	DNA type IV secretion system protein ComB10	Machinery gene
QAP01_RS07110 (QAP01_07110)	comB9	1496250..1497218 (-)	969	WP_286498181.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QAP01_RS07115 (QAP01_07115)	comB8	1497218..1497961 (-)	744	WP_001208392.1	virB8 family protein	Machinery gene
QAP01_RS07120 (QAP01_07120)	comB7	1497958..1498071 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
QAP01_RS07125 (QAP01_07125)	comB6	1498087..1499142 (-)	1056	WP_286498805.1	P-type conjugative transfer protein TrbL	Machinery gene
QAP01_RS07130 (QAP01_07130)	-	1499150..1500145 (-)	996	WP_286498182.1	PDZ domain-containing protein	-
QAP01_RS07135 (QAP01_07135)	-	1500145..1500447 (-)	303	WP_000347928.1	YbaB/EbfC family nucleoid-associated protein	-
QAP01_RS07140 (QAP01_07140)	panD	1500450..1500803 (-)	354	WP_100950247.1	aspartate 1-decarboxylase	-
QAP01_RS07145 (QAP01_07145)	-	1500793..1503018 (-)	2226	WP_286498183.1	ATP-dependent Clp protease ATP-binding subunit	-
QAP01_RS07150 (QAP01_07150)	-	1503018..1503293 (-)	276	WP_286498184.1	ATP-dependent Clp protease adaptor ClpS	-
QAP01_RS07155 (QAP01_07155)	-	1503316..1503729 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39753.74 Da
• Isoelectric Point: 9.0413

>NTDB_id=817367 QAP01_RS07125 WP_286498805.1 1498087..1499142(-) (comB6) [Helicobacter pylori strain BS28-1]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQVLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVIICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNAFNSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=817367 QAP01_RS07125 WP_286498805.1 1498087..1499142(-) (comB6) [Helicobacter pylori strain BS28-1]
ATGAAAAATGACGCTTATGAAATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTTGCTGAATT
TTTTCTCTACACTTTGCATGCGCAACTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGTGCGCTTTTAGAAGCGTTATTGTTTGTGGGTTTTTTTGCGCTGTTTAACTAC
GCTTTAAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCCAACATGATCGCACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATTAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATCTTGCAAGTGCTTTTTTTGAGCGTTTTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGATTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCACATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGTGCTAACCTCAGCCAAAACGCTTTCAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.011	100	0.96