Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   R8563_RS06250 Genome accession   NZ_AP026917
Coordinates   1222704..1223273 (-) Length   189 a.a.
NCBI ID   WP_075219010.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700007     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1217704..1228273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8563_RS06220 (PC0007_12160) - 1217808..1218050 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  R8563_RS06225 (PC0007_12170) - 1218107..1218685 (-) 579 WP_054363471.1 iron permease -
  R8563_RS06230 (PC0007_12180) - 1218660..1219673 (-) 1014 Protein_1228 Dyp-type peroxidase -
  R8563_RS06235 - 1219643..1220134 (-) 492 Protein_1229 winged helix-turn-helix domain-containing protein -
  R8563_RS06240 (PC0007_12200) gdhA 1220669..1222015 (+) 1347 WP_000199537.1 NADP-specific glutamate dehydrogenase -
  R8563_RS06245 (PC0007_12210) - 1222521..1222691 (-) 171 WP_000711943.1 hypothetical protein -
  R8563_RS06250 (PC0007_12220) comA 1222704..1223273 (-) 570 WP_075219010.1 ATP-binding cassette domain-containing protein Regulator
  R8563_RS06255 - 1223299..1224104 (-) 806 Protein_1233 IS5 family transposase -
  R8563_RS06260 - 1224360..1225407 (+) 1048 WP_225532208.1 IS630 family transposase -
  R8563_RS06265 (PC0007_12270) - 1225519..1225968 (-) 450 WP_000424226.1 YhcH/YjgK/YiaL family protein -
  R8563_RS06270 cdd 1225981..1226387 (-) 407 Protein_1236 cytidine deaminase -
  R8563_RS06280 (PC0007_12290) - 1226474..1226929 (-) 456 WP_001000318.1 HIT family protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 21129.56 Da        Isoelectric Point: 8.4271

>NTDB_id=81726 R8563_RS06250 WP_075219010.1 1222704..1223273(-) (comA) [Streptococcus pneumoniae strain PZ900700007]
MPSGLYKIDTGKVLFDGININQIDKKILSQNLGVVPQDSFLLNRSILDNITLKNEVTSQKIEEVCKAVQIYDEIMAMPMK
FNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIKSQGCTQIIVAHRLSTIKDADIIFVM
KGGKIVESGNHKYLMELGGEYYSLYTKRK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=81726 R8563_RS06250 WP_075219010.1 1222704..1223273(-) (comA) [Streptococcus pneumoniae strain PZ900700007]
ATACCATCAGGATTATATAAGATTGATACAGGAAAAGTTTTATTTGATGGTATAAATATTAATCAAATAGATAAAAAAAT
ATTAAGTCAAAATTTAGGAGTAGTTCCACAGGATTCATTTTTATTGAACCGAAGTATTCTTGATAATATAACTTTAAAGA
ACGAAGTTACTTCACAAAAGATAGAGGAAGTTTGTAAAGCAGTTCAAATCTATGATGAAATCATGGCTATGCCGATGAAA
TTTAATACTATCATCTCAGAGATGGGTTCAAATATTTCAGGTGGTCAAAGACAACGGATAGCACTGGCACGTGCATTAAT
AAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCTTTAGACACTATTAATGAGGAAAGAATAACAAAGTATA
TAAAAAGTCAGGGCTGTACTCAAATAATTGTAGCTCATAGATTGTCAACGATTAAGGATGCGGATATTATTTTTGTAATG
AAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGGAGCTTGGTGGAGAGTACTACAGCTTATATACAAA
AAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

41.489

99.471

0.413
  comA/nlmT Streptococcus mutans UA159

41.848

97.354

0.407
  comA Streptococcus mitis NCTC 12261

41.398

98.413

0.407
  comA Streptococcus mitis SK321

40.86

98.413

0.402
  comA Streptococcus pneumoniae Rx1

40.323

98.413

0.397
  comA Streptococcus pneumoniae D39

40.323

98.413

0.397
  comA Streptococcus pneumoniae R6

40.323

98.413

0.397
  comA Streptococcus pneumoniae TIGR4

39.247

98.413

0.386

Multiple sequence alignment