Detailed information NTG0816262

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: QCM40_RS02335
• Genome accession: NZ_CP122516
• Coordinates: 459724..460854 (+)
• Length: 376 a.a.
• NCBI ID: WP_279955854.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain HP34
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 454724..465854

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QCM40_RS02300 (QCM40_02300)	panD	455172..455525 (+)	354	WP_120911231.1	aspartate 1-decarboxylase	-
QCM40_RS02305 (QCM40_02305)	-	455528..455821 (+)	294	WP_048944407.1	YbaB/EbfC family nucleoid-associated protein	-
QCM40_RS02310 (QCM40_02310)	-	455821..456825 (+)	1005	WP_279956553.1	PDZ domain-containing protein	-
QCM40_RS02315 (QCM40_02315)	comB6	456833..457888 (+)	1056	WP_279956554.1	P-type conjugative transfer protein TrbL	Machinery gene
QCM40_RS02320 (QCM40_02320)	comB7	457904..458029 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
QCM40_RS02325 (QCM40_02325)	comB8	458026..458769 (+)	744	WP_058338730.1	virB8 family protein	Machinery gene
QCM40_RS02330 (QCM40_02330)	comB9	458769..459731 (+)	963	WP_279955853.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QCM40_RS02335 (QCM40_02335)	comB10	459724..460854 (+)	1131	WP_279955854.1	DNA type IV secretion system protein ComB10	Machinery gene
QCM40_RS02340 (QCM40_02340)	-	460924..462336 (+)	1413	WP_279955855.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
QCM40_RS02345 (QCM40_02345)	gmd	462350..463495 (+)	1146	WP_279955856.1	GDP-mannose 4,6-dehydratase	-
QCM40_RS02350 (QCM40_02350)	-	463488..464420 (+)	933	WP_279955857.1	GDP-L-fucose synthase	-
QCM40_RS02355 (QCM40_02355)	-	464809..465093 (-)	285	WP_120927544.1	hypothetical protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41976.55 Da
• Isoelectric Point: 9.7760

>NTDB_id=816262 QCM40_RS02335 WP_279955854.1 459724..460854(+) (comB10) [Helicobacter pylori strain HP34]
MNKWIKGVLVFAGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTPTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFTNPPIDPNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1131 bp

>NTDB_id=816262 QCM40_RS02335 WP_279955854.1 459724..460854(+) (comB10) [Helicobacter pylori strain HP34]
ATGAATAAGTGGATTAAGGGGGTGCTTGTTTTTGCAGGGGGGTTTGCAACGATTATAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCCTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTCCTACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCATTCTAAAGAAGAAACTTTTACTAACCCTCCCATAGATCCAAACAC
AACCCCCCCTAAAAAAGACTTTTCTCTCAAGCAATTAGATTTACTGGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAT
ATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAGATGATACCCGCCTTTCTCATCACGCCTATTTC
TAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCAAGCATGGGAAAGGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCCTAGATATTGTATGGAGCCGCATC
ATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTGGGATCA
CTTCGGCTTTAAACAACAGGGGCAATAAAGAAGAGGTGACCAATTTCTTTGGGGATTATCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTAGTCAATCAAATTTTAAGAGACAAAAGCAAGATCGCCCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATATTCTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (171-362)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.011	100	0.96