Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   QCM40_RS02325 Genome accession   NZ_CP122516
Coordinates   458026..458769 (+) Length   247 a.a.
NCBI ID   WP_058338730.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP34     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 453026..463769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCM40_RS02300 (QCM40_02300) panD 455172..455525 (+) 354 WP_120911231.1 aspartate 1-decarboxylase -
  QCM40_RS02305 (QCM40_02305) - 455528..455821 (+) 294 WP_048944407.1 YbaB/EbfC family nucleoid-associated protein -
  QCM40_RS02310 (QCM40_02310) - 455821..456825 (+) 1005 WP_279956553.1 PDZ domain-containing protein -
  QCM40_RS02315 (QCM40_02315) comB6 456833..457888 (+) 1056 WP_279956554.1 P-type conjugative transfer protein TrbL Machinery gene
  QCM40_RS02320 (QCM40_02320) comB7 457904..458029 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  QCM40_RS02325 (QCM40_02325) comB8 458026..458769 (+) 744 WP_058338730.1 virB8 family protein Machinery gene
  QCM40_RS02330 (QCM40_02330) comB9 458769..459731 (+) 963 WP_279955853.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  QCM40_RS02335 (QCM40_02335) comB10 459724..460854 (+) 1131 WP_279955854.1 DNA type IV secretion system protein ComB10 Machinery gene
  QCM40_RS02340 (QCM40_02340) - 460924..462336 (+) 1413 WP_279955855.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  QCM40_RS02345 (QCM40_02345) gmd 462350..463495 (+) 1146 WP_279955856.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28684.91 Da        Isoelectric Point: 8.9546

>NTDB_id=816260 QCM40_RS02325 WP_058338730.1 458026..458769(+) (comB8) [Helicobacter pylori strain HP34]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAVVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=816260 QCM40_RS02325 WP_058338730.1 458026..458769(+) (comB8) [Helicobacter pylori strain HP34]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTCGGTTGGAGAGGAACCGCTTGAAAATCGCTT
ACAAGCTTTTAGGTTTGATGAGTTTTATCGCTCTTGTTTTAGCAGTTGTTTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCTATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCTATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCCTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972