Detailed information NTG0816258

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: QCM40_RS02315
• Genome accession: NZ_CP122516
• Coordinates: 456833..457888 (+)
• Length: 351 a.a.
• NCBI ID: WP_279956554.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain HP34
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 451833..462888

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QCM40_RS02285 (QCM40_02285)	-	452246..452659 (+)	414	WP_001023008.1	universal stress protein	-
QCM40_RS02290 (QCM40_02290)	-	452682..452957 (+)	276	WP_000784907.1	ATP-dependent Clp protease adaptor ClpS	-
QCM40_RS02295 (QCM40_02295)	-	452957..455182 (+)	2226	WP_279955852.1	ATP-dependent Clp protease ATP-binding subunit	-
QCM40_RS02300 (QCM40_02300)	panD	455172..455525 (+)	354	WP_120911231.1	aspartate 1-decarboxylase	-
QCM40_RS02305 (QCM40_02305)	-	455528..455821 (+)	294	WP_048944407.1	YbaB/EbfC family nucleoid-associated protein	-
QCM40_RS02310 (QCM40_02310)	-	455821..456825 (+)	1005	WP_279956553.1	PDZ domain-containing protein	-
QCM40_RS02315 (QCM40_02315)	comB6	456833..457888 (+)	1056	WP_279956554.1	P-type conjugative transfer protein TrbL	Machinery gene
QCM40_RS02320 (QCM40_02320)	comB7	457904..458029 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
QCM40_RS02325 (QCM40_02325)	comB8	458026..458769 (+)	744	WP_058338730.1	virB8 family protein	Machinery gene
QCM40_RS02330 (QCM40_02330)	comB9	458769..459731 (+)	963	WP_279955853.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QCM40_RS02335 (QCM40_02335)	comB10	459724..460854 (+)	1131	WP_279955854.1	DNA type IV secretion system protein ComB10	Machinery gene
QCM40_RS02340 (QCM40_02340)	-	460924..462336 (+)	1413	WP_279955855.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39843.79 Da
• Isoelectric Point: 8.8155

>NTDB_id=816258 QCM40_RS02315 WP_279956554.1 456833..457888(+) (comB6) [Helicobacter pylori strain HP34]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALSFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVIICLKKCFALGFYKPFLLLVGFLNVSVTKALIDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=816258 QCM40_RS02315 WP_279956554.1 456833..457888(+) (comB6) [Helicobacter pylori strain HP34]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTTACGGCAATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGTCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGCTTTTATGCCCTTAGCT
TTATTAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTAATTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCGTTAATAGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.011	100	0.96