Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   QCM40_RS02330 Genome accession   NZ_CP122516
Coordinates   458769..459731 (+) Length   320 a.a.
NCBI ID   WP_279955853.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP34     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 453769..464731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCM40_RS02300 (QCM40_02300) panD 455172..455525 (+) 354 WP_120911231.1 aspartate 1-decarboxylase -
  QCM40_RS02305 (QCM40_02305) - 455528..455821 (+) 294 WP_048944407.1 YbaB/EbfC family nucleoid-associated protein -
  QCM40_RS02310 (QCM40_02310) - 455821..456825 (+) 1005 WP_279956553.1 PDZ domain-containing protein -
  QCM40_RS02315 (QCM40_02315) comB6 456833..457888 (+) 1056 WP_279956554.1 P-type conjugative transfer protein TrbL Machinery gene
  QCM40_RS02320 (QCM40_02320) comB7 457904..458029 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  QCM40_RS02325 (QCM40_02325) comB8 458026..458769 (+) 744 WP_058338730.1 virB8 family protein Machinery gene
  QCM40_RS02330 (QCM40_02330) comB9 458769..459731 (+) 963 WP_279955853.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  QCM40_RS02335 (QCM40_02335) comB10 459724..460854 (+) 1131 WP_279955854.1 DNA type IV secretion system protein ComB10 Machinery gene
  QCM40_RS02340 (QCM40_02340) - 460924..462336 (+) 1413 WP_279955855.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  QCM40_RS02345 (QCM40_02345) gmd 462350..463495 (+) 1146 WP_279955856.1 GDP-mannose 4,6-dehydratase -
  QCM40_RS02350 (QCM40_02350) - 463488..464420 (+) 933 WP_279955857.1 GDP-L-fucose synthase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 36815.40 Da        Isoelectric Point: 9.4585

>NTDB_id=816261 QCM40_RS02330 WP_279955853.1 458769..459731(+) (comB9) [Helicobacter pylori strain HP34]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide


Download         Length: 963 bp        

>NTDB_id=816261 QCM40_RS02330 WP_279955853.1 458769..459731(+) (comB9) [Helicobacter pylori strain HP34]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGACTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATACCCTTGAAAAGGCTCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGGTTGGGCAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

93.252

100

0.95