Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   R1T12_RS28855 Genome accession   NZ_CP136909
Coordinates   6181102..6181626 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa PA103     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6176102..6186626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T12_RS28840 (R1T12_28840) aroB 6177218..6178324 (-) 1107 WP_019484454.1 3-dehydroquinate synthase -
  R1T12_RS28845 (R1T12_28845) aroK 6178374..6178892 (-) 519 WP_003095833.1 shikimate kinase AroK -
  R1T12_RS28850 (R1T12_28850) pilQ 6178904..6181048 (-) 2145 WP_015503770.1 type 4a pilus secretin PilQ Machinery gene
  R1T12_RS28855 (R1T12_28855) comL/pilP 6181102..6181626 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  R1T12_RS28860 (R1T12_28860) pilO 6181623..6182246 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  R1T12_RS28865 (R1T12_28865) pilN 6182243..6182839 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  R1T12_RS28870 (R1T12_28870) pilM 6182839..6183903 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  R1T12_RS28875 (R1T12_28875) - 6184088..6186559 (+) 2472 WP_019484455.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=816261 R1T12_RS28855 WP_003095836.1 6181102..6181626(-) (comL/pilP) [Pseudomonas aeruginosa PA103]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=816261 R1T12_RS28855 WP_003095836.1 6181102..6181626(-) (comL/pilP) [Pseudomonas aeruginosa PA103]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362