Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAO53_RS13925 | Genome accession | NZ_CP122491 |
| Coordinates | 2807637..2808107 (+) | Length | 156 a.a. |
| NCBI ID | WP_000610650.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain BE-MSSA3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2780396..2812634 | 2807637..2808107 | within | 0 |
Gene organization within MGE regions
Location: 2780396..2812634
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAO53_RS13745 (QAO53_13720) | groES | 2780396..2780680 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| QAO53_RS13750 (QAO53_13725) | groL | 2780756..2782372 (+) | 1617 | WP_000240649.1 | chaperonin GroEL | - |
| QAO53_RS13755 (QAO53_13730) | - | 2782467..2783013 (-) | 547 | Protein_2668 | site-specific integrase | - |
| QAO53_RS13760 (QAO53_13735) | - | 2783074..2783286 (+) | 213 | WP_000128898.1 | LuxR C-terminal-related transcriptional regulator | - |
| QAO53_RS13765 (QAO53_13740) | - | 2783283..2783873 (+) | 591 | WP_001293059.1 | terminase small subunit | - |
| QAO53_RS13770 (QAO53_13745) | - | 2784190..2784627 (+) | 438 | WP_072419900.1 | hypothetical protein | - |
| QAO53_RS13775 (QAO53_13750) | - | 2784733..2785176 (+) | 444 | WP_000022887.1 | GNAT family N-acetyltransferase | - |
| QAO53_RS13780 (QAO53_13755) | - | 2786019..2787326 (-) | 1308 | WP_001045063.1 | TrkH family potassium uptake protein | - |
| QAO53_RS13785 (QAO53_13760) | - | 2787487..2788398 (+) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| QAO53_RS13790 (QAO53_13765) | - | 2788460..2789305 (+) | 846 | WP_000812008.1 | class I SAM-dependent methyltransferase | - |
| QAO53_RS13795 (QAO53_13770) | - | 2789677..2789895 (-) | 219 | Protein_2676 | succinyl-diaminopimelate desuccinylase | - |
| QAO53_RS13800 (QAO53_13775) | istA | 2790014..2791249 (+) | 1236 | WP_001215400.1 | IS21 family transposase | - |
| QAO53_RS13805 (QAO53_13780) | istB | 2791261..2792028 (+) | 768 | WP_001095317.1 | IS21-like element helper ATPase IstB | - |
| QAO53_RS13810 (QAO53_13785) | - | 2792090..2793103 (-) | 1014 | Protein_2679 | ArgE/DapE family deacylase | - |
| QAO53_RS13815 (QAO53_13790) | lukH | 2793538..2794590 (+) | 1053 | WP_000791416.1 | bi-component leukocidin LukGH subunit H | - |
| QAO53_RS13820 (QAO53_13795) | lukG | 2794612..2795628 (+) | 1017 | WP_000595402.1 | bi-component leukocidin LukGH subunit G | - |
| QAO53_RS13825 (QAO53_13800) | sph | 2795866..2796694 (-) | 829 | Protein_2682 | sphingomyelin phosphodiesterase | - |
| QAO53_RS13830 (QAO53_13805) | - | 2796748..2797785 (-) | 1038 | WP_053014760.1 | tyrosine-type recombinase/integrase | - |
| QAO53_RS13835 (QAO53_13810) | - | 2797893..2798507 (+) | 615 | WP_000191460.1 | hypothetical protein | - |
| QAO53_RS13840 (QAO53_13815) | - | 2798504..2798650 (-) | 147 | WP_001013104.1 | hypothetical protein | - |
| QAO53_RS13845 (QAO53_13820) | - | 2798686..2798868 (-) | 183 | WP_000694772.1 | hypothetical protein | - |
| QAO53_RS13850 (QAO53_13825) | - | 2799068..2799838 (-) | 771 | WP_001208482.1 | S24 family peptidase | - |
| QAO53_RS13855 (QAO53_13830) | - | 2799997..2800221 (+) | 225 | WP_000338186.1 | DUF739 family protein | - |
| QAO53_RS13860 (QAO53_13835) | - | 2800239..2800499 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| QAO53_RS13865 (QAO53_13840) | - | 2800523..2801062 (-) | 540 | WP_000351243.1 | hypothetical protein | - |
| QAO53_RS13870 (QAO53_13845) | - | 2801119..2801871 (+) | 753 | WP_024928163.1 | phage antirepressor KilAC domain-containing protein | - |
| QAO53_RS13875 (QAO53_13850) | - | 2801887..2802084 (+) | 198 | Protein_2692 | hypothetical protein | - |
| QAO53_RS13880 (QAO53_13855) | - | 2802115..2802255 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| QAO53_RS13885 (QAO53_13860) | - | 2802270..2802902 (-) | 633 | WP_000275058.1 | hypothetical protein | - |
| QAO53_RS13890 (QAO53_13865) | - | 2802961..2803281 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| QAO53_RS13895 (QAO53_13870) | - | 2803278..2803439 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| QAO53_RS13900 (QAO53_13875) | - | 2803532..2803792 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| QAO53_RS13905 (QAO53_13880) | - | 2803801..2804064 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| QAO53_RS13910 (QAO53_13885) | - | 2804073..2806016 (+) | 1944 | WP_411888824.1 | AAA family ATPase | - |
| QAO53_RS13915 (QAO53_13890) | - | 2806018..2806938 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| QAO53_RS13920 (QAO53_13895) | - | 2807019..2807636 (+) | 618 | WP_073394849.1 | MBL fold metallo-hydrolase | - |
| QAO53_RS13925 (QAO53_13900) | ssbA | 2807637..2808107 (+) | 471 | WP_000610650.1 | single-stranded DNA-binding protein | Machinery gene |
| QAO53_RS13930 (QAO53_13905) | - | 2808137..2809030 (+) | 894 | WP_000148335.1 | DnaD domain protein | - |
| QAO53_RS13935 (QAO53_13910) | - | 2809037..2809251 (+) | 215 | Protein_2704 | hypothetical protein | - |
| QAO53_RS13940 (QAO53_13915) | - | 2809260..2809664 (+) | 405 | WP_000401976.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QAO53_RS13945 (QAO53_13920) | - | 2809677..2810048 (+) | 372 | WP_000101268.1 | SA1788 family PVL leukocidin-associated protein | - |
| QAO53_RS13950 (QAO53_13925) | - | 2810049..2810297 (+) | 249 | WP_001126836.1 | phi PVL orf 51-like protein | - |
| QAO53_RS13955 (QAO53_13930) | - | 2810362..2810811 (+) | 450 | WP_000982708.1 | YopX family protein | - |
| QAO53_RS13960 (QAO53_13935) | - | 2810865..2811092 (+) | 228 | Protein_2709 | hypothetical protein | - |
| QAO53_RS13965 (QAO53_13940) | - | 2811085..2811339 (+) | 255 | WP_000370292.1 | DUF1024 family protein | - |
| QAO53_RS13970 (QAO53_13945) | - | 2811459..2811659 (+) | 201 | WP_000265042.1 | DUF1514 family protein | - |
| QAO53_RS13975 (QAO53_13950) | - | 2811687..2812103 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| QAO53_RS13980 (QAO53_13955) | - | 2812335..2812634 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17658.50 Da Isoelectric Point: 4.9628
>NTDB_id=816120 QAO53_RS13925 WP_000610650.1 2807637..2808107(+) (ssbA) [Staphylococcus aureus strain BE-MSSA3]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=816120 QAO53_RS13925 WP_000610650.1 2807637..2808107(+) (ssbA) [Staphylococcus aureus strain BE-MSSA3]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAATCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAATCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.564 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |