Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   R1T10_RS09795 Genome accession   NZ_CP136807
Coordinates   1943645..1943926 (-) Length   93 a.a.
NCBI ID   WP_002234641.1    Uniprot ID   -
Organism   Neisseria meningitidis NMB     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1938645..1948926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T10_RS09760 - 1938947..1939585 (-) 639 WP_002219714.1 7-carboxy-7-deazaguanine synthase QueE -
  R1T10_RS09765 - 1939582..1939953 (-) 372 WP_002217868.1 DUF1304 domain-containing protein -
  R1T10_RS09770 queD 1940222..1940644 (-) 423 WP_002226636.1 6-carboxytetrahydropterin synthase QueD -
  R1T10_RS09775 - 1940651..1941166 (-) 516 WP_002217871.1 DUF1543 domain-containing protein -
  R1T10_RS09780 queC 1941194..1941853 (-) 660 WP_002214426.1 7-cyano-7-deazaguanine synthase QueC -
  R1T10_RS09785 - 1941958..1942383 (+) 426 WP_002221417.1 hypothetical protein -
  R1T10_RS09790 - 1942398..1943624 (+) 1227 WP_002217875.1 YihY family inner membrane protein -
  R1T10_RS09795 comA 1943645..1943926 (-) 282 WP_002234641.1 ATP-binding cassette domain-containing protein Regulator
  R1T10_RS09800 - 1944005..1944139 (-) 135 Protein_1886 IS1595 family transposase -
  R1T10_RS09805 - 1944138..1944596 (-) 459 WP_002214429.1 hypothetical protein -
  R1T10_RS09810 - 1945160..1945363 (-) 204 WP_002261355.1 hypothetical protein -
  R1T10_RS09815 - 1945927..1946862 (-) 936 WP_002221423.1 immunity 49 family protein -
  R1T10_RS09820 - 1946865..1947485 (-) 621 WP_002244464.1 hypothetical protein -
  R1T10_RS09825 - 1947720..1947806 (-) 87 Protein_1891 VENN motif pre-toxin domain-containing protein -
  R1T10_RS09830 - 1948037..1948309 (-) 273 WP_002214440.1 hypothetical protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10086.79 Da        Isoelectric Point: 6.7077

>NTDB_id=815871 R1T10_RS09795 WP_002234641.1 1943645..1943926(-) (comA) [Neisseria meningitidis NMB]
MIHEEICAMPMGYETLIGDMGSALSGGQKQRIVLARALYCEPKILFLDAATSHLDIANEKAVNANLNGLSIIKIMAAHRK
ETVESADRKMSLG

Nucleotide


Download         Length: 282 bp        

>NTDB_id=815871 R1T10_RS09795 WP_002234641.1 1943645..1943926(-) (comA) [Neisseria meningitidis NMB]
ATGATTCACGAAGAAATCTGCGCCATGCCTATGGGCTATGAAACCTTGATCGGCGATATGGGCAGCGCACTGTCAGGCGG
ACAAAAACAACGCATCGTATTGGCGCGGGCCTTATATTGCGAACCGAAAATCCTATTTTTAGATGCAGCGACCAGCCATT
TGGATATTGCCAATGAAAAAGCAGTCAATGCAAACTTGAATGGCTTGTCTATCATAAAAATTATGGCGGCACACAGAAAG
GAAACGGTGGAATCAGCAGATAGGAAAATGTCTTTAGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(15-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

45.055

97.849

0.441
  comA/nlmT Streptococcus mutans UA159

45.977

93.548

0.43
  comA Streptococcus pneumoniae TIGR4

43.956

97.849

0.43
  comA Streptococcus pneumoniae Rx1

43.956

97.849

0.43
  comA Streptococcus pneumoniae D39

43.956

97.849

0.43
  comA Streptococcus pneumoniae R6

43.956

97.849

0.43
  comA Streptococcus mitis NCTC 12261

43.956

97.849

0.43
  comA Streptococcus gordonii str. Challis substr. CH1

42.857

97.849

0.419