Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QC826_RS25220 Genome accession   NZ_CP122407
Coordinates   5464964..5466475 (+) Length   503 a.a.
NCBI ID   WP_279762952.1    Uniprot ID   -
Organism   Rugamonas sp. DEMB1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5459964..5471475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC826_RS25195 (QC826_25195) gshA 5460014..5461315 (-) 1302 WP_093389855.1 glutamate--cysteine ligase -
  QC826_RS25200 (QC826_25200) - 5461494..5463044 (-) 1551 WP_279762950.1 ammonium transporter -
  QC826_RS25205 (QC826_25205) - 5463056..5463394 (-) 339 WP_010393464.1 P-II family nitrogen regulator -
  QC826_RS25210 (QC826_25210) - 5463406..5464161 (-) 756 WP_279762951.1 TorF family putative porin -
  QC826_RS25215 (QC826_25215) - 5464426..5464671 (+) 246 WP_093389852.1 accessory factor UbiK family protein -
  QC826_RS25220 (QC826_25220) comM 5464964..5466475 (+) 1512 WP_279762952.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QC826_RS25225 (QC826_25225) - 5466522..5467067 (+) 546 WP_279762953.1 hypothetical protein -
  QC826_RS25230 (QC826_25230) - 5467201..5467542 (+) 342 WP_279762954.1 DUF1840 domain-containing protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54527.46 Da        Isoelectric Point: 8.3137

>NTDB_id=815484 QC826_RS25220 WP_279762952.1 5464964..5466475(+) (comM) [Rugamonas sp. DEMB1]
MSLAVLKSRALAGMEAPEVSVEVHLANGLPSFTIVGLPETEVKEARDRVRAAIQNGGFEMPAQRITVNLAPADLPKESGR
FDLPIALGILAASRQLPSSQLHRYEYAGELSLSGELRPIRGALAMSFAMRRDGAEHAFIVPQANADEAALVAGAAIYPAR
SLLQVCAHFAALTPDAALQRHQPSLLLAAAEYADFAEVKGQLFAKRALEVAAAGGHSVLLVGSPGTGKTMLASRFAGLLP
PMSDEEALESAAVQSLCGRFNPELWKRRPFRAPHHTASGPALVGGGGQPRPGEISLAHCGVLFLDELAEFDRRVLDVLRE
PMESGRIVISRAARQAEFPARFQLIAAMNPCPCGYLGHASGQCRCSPDTILRYQGRISGPLLDRIDIQLEMAEVEPETLA
APADGDSSAVIAARVEQARLRQLQRQQKSNQQLLPRDIDRHCKPDRAGEYLLRSTMQQFQWSARAYHRVLRVARSVADLA
GARTINQAHVGEAIQYRRALRER

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=815484 QC826_RS25220 WP_279762952.1 5464964..5466475(+) (comM) [Rugamonas sp. DEMB1]
ATGAGCTTAGCCGTGCTGAAAAGCCGCGCCCTGGCCGGCATGGAGGCGCCGGAAGTGAGCGTCGAGGTGCATCTGGCCAA
CGGCCTGCCCTCCTTCACCATCGTCGGCCTGCCCGAGACCGAGGTCAAAGAGGCGCGCGACCGGGTCCGCGCGGCGATCC
AGAACGGCGGCTTCGAGATGCCGGCCCAGCGCATCACCGTCAACCTGGCGCCGGCCGACCTGCCCAAGGAATCCGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATATTGGCCGCCTCGCGCCAACTTCCCTCCAGCCAATTGCACCGCTATGAATACGC
CGGCGAACTGTCGCTGTCGGGCGAGTTGCGGCCCATCCGCGGCGCGCTGGCGATGTCCTTCGCCATGCGCCGCGACGGCG
CCGAGCACGCCTTCATCGTGCCGCAGGCCAACGCCGACGAGGCGGCCCTGGTGGCCGGCGCCGCCATCTACCCGGCCCGC
TCGCTGCTGCAAGTGTGCGCCCACTTCGCCGCGCTGACGCCGGACGCCGCCCTGCAGCGCCACCAGCCCAGCCTGCTGCT
GGCGGCCGCCGAGTACGCCGACTTCGCCGAGGTGAAAGGCCAGCTGTTCGCCAAGCGCGCGCTGGAGGTGGCGGCGGCGG
GAGGCCACAGCGTGCTGTTGGTCGGCTCGCCCGGCACCGGCAAGACCATGCTGGCTAGCCGCTTCGCCGGCCTGTTGCCG
CCGATGAGCGACGAGGAGGCGCTGGAGTCGGCCGCCGTGCAATCGCTCTGCGGCCGCTTCAACCCCGAGCTGTGGAAGCG
CCGGCCGTTCCGCGCACCGCACCACACCGCCTCGGGGCCGGCCCTGGTCGGCGGCGGCGGCCAACCCCGGCCGGGCGAGA
TCTCGCTGGCCCATTGCGGCGTGCTGTTCCTCGACGAGCTGGCCGAATTCGACCGCCGTGTGCTCGACGTGCTGCGCGAA
CCGATGGAATCGGGCCGCATCGTCATTTCGCGCGCGGCGCGCCAGGCCGAGTTCCCCGCCCGCTTCCAGCTGATCGCCGC
GATGAACCCCTGCCCCTGCGGCTACCTGGGCCATGCCAGCGGCCAATGCCGCTGCTCGCCCGATACCATCCTGCGCTACC
AGGGCCGCATCTCCGGCCCGCTGCTCGACCGCATCGACATCCAGCTCGAAATGGCCGAGGTGGAGCCGGAGACCTTGGCC
GCCCCGGCCGACGGCGACAGCAGCGCCGTCATCGCGGCGCGCGTCGAACAAGCCCGCCTGCGGCAATTGCAACGCCAACA
AAAGAGCAACCAGCAACTGTTGCCGCGCGACATAGACCGCCACTGCAAGCCGGACCGCGCCGGCGAATATCTGTTGCGCA
GCACCATGCAGCAATTCCAATGGTCGGCGCGCGCCTACCACCGCGTGTTGCGCGTGGCCCGCAGCGTCGCCGACCTGGCC
GGCGCACGCACCATCAACCAGGCCCATGTGGGCGAAGCGATACAGTACCGGCGCGCGCTGCGCGAGCGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-144)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.507

99.205

0.531
  comM Vibrio campbellii strain DS40M4

53.2

99.404

0.529
  comM Glaesserella parasuis strain SC1401

50.696

100

0.507
  comM Haemophilus influenzae Rd KW20

50.099

100

0.503
  comM Legionella pneumophila str. Paris

49.307

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.307

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.825

99.801

0.437