NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	QBS18_RS19620	Genome accession	NZ_CP121856
Coordinates	4176404..4177918 (+)	Length	504 a.a.
NCBI ID	WP_279498935.1	Uniprot ID	-
Organism	Aeromonas veronii strain LOID 16013
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 4171404..4182918

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QBS18_RS19605	-	4173141..4174085 (-)	945	WP_274160737.1	branched-chain amino acid transaminase	-
QBS18_RS19610	ilvM	4174098..4174376 (-)	279	WP_005342011.1	acetolactate synthase 2 small subunit	-
QBS18_RS19615	ilvG	4174373..4176019 (-)	1647	WP_255911928.1	acetolactate synthase 2 catalytic subunit	-
QBS18_RS19620	comM	4176404..4177918 (+)	1515	WP_279498935.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
QBS18_RS19625	-	4178045..4178944 (+)	900	WP_279498934.1	acyltransferase	-
QBS18_RS19630	-	4178951..4179916 (+)	966	WP_279498933.1	acyltransferase	-
QBS18_RS19635	-	4179841..4180347 (-)	507	WP_279498931.1	DUF523 domain-containing protein	-
QBS18_RS19640	-	4180344..4180994 (-)	651	WP_005339607.1	DNA mismatch repair protein MutT	-
QBS18_RS19645	-	4181069..4181704 (+)	636	WP_005357452.1	nicotinamidase	-

Sequence

Protein

Download Length: 504 a.a. Molecular weight: 54711.59 Da Isoelectric Point: 7.2611

                                >NTDB_id=814836 QBS18_RS19620 WP_279498935.1 4176404..4177918(+) (comM) [Aeromonas veronii strain LOID 16013]

MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR

FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL

LAVTAWLTGQYELPLPDPQSSESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ

EAQQTAAIHSIDGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET

GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG

ESSQQIRDRVLVARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI

GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide

Download Length: 1515 bp

                                >NTDB_id=814836 QBS18_RS19620 WP_279498935.1 4176404..4177918(+) (comM) [Aeromonas veronii strain LOID 16013]

ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCACAAGTTACAGTGGAAGTTCACCTCTCCAA

CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGAGATCGGGTCCGCAGCGCCCTGC

TCAACGGCAATTTCGAGTTCCCGAGTAAACACATCACCGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGAGGCCGT

TTCGATCTGGCAATCGCCATCGGTATTCTTGCCGCTTCCAAGCAGATACCGGCAAAATACCTGCTCGATCATGAATTTTT

GGGGGAGTTGGCTCTGACCGGCGAAATTCGCCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGGC

GCACCCTGCTGGTACCGCGAGAGAACGGCCCGGAAGCCTCTCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAGTTG

CTGGCCGTTACCGCCTGGCTGACCGGTCAGTACGAACTGCCGCTACCGGATCCACAAAGCTCGGAGAGCCTGCCCGATGT

ACCGGATCTGCAGGATGTGATTGGTCAGTCTCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC

TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCTTGCCCGGCATCTTGCCACCGCTGAGCGAGCAG

GAAGCGCAGCAGACCGCCGCCATCCACTCCATCGACGGCCTCACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG

CACGCCCCACCACAGTGCCTCAGCGGTGGCGCTGGTGGGCGGTGGCAGCCACCCGCGGCCCGGCGAAATTTCGCTGGCCC

ACAACGGGGTGCTGTTTCTGGATGAATTGCCCGAATTCGAGCGCAAGGTGCTCGACTCCCTGCGTGAGCCGCTGGAGACG

GGCCACATCACCATCAGCCGGGCCGCCCGCCAGGTGGATTTTCCCGCTCGCTTCCAGCTGGTGGGCGCCATGAATCCCAG

CCCCTGCGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAACTCTCCGGCC

CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGTCTGACCGGCAAGGCGGAGCGGGGG

GAGTCTAGCCAGCAGATCCGCGATCGGGTGCTGGTGGCGAGAGAGCGCATGCTGAGTCGCAACGGCAAGCTCAACAACCT

GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCACCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC

TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC

GGCAAGGAGCATCTTATCGAGGCGCTCGGTTACAGGGCCATGGACCGGCTGCTGTCGCGACTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	64.087	100	0.641
comM	Haemophilus influenzae Rd KW20	61.66	100	0.619
comM	Vibrio campbellii strain DS40M4	62.151	99.603	0.619
comM	Glaesserella parasuis strain SC1401	60.355	100	0.607
comM	Legionella pneumophila str. Paris	50.992	100	0.51
comM	Legionella pneumophila strain ERS1305867	50.992	100	0.51
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.245	100	0.464

Detailed information NTG0814836