Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QBS04_RS19645 Genome accession   NZ_CP121854
Coordinates   4145652..4147166 (+) Length   504 a.a.
NCBI ID   WP_279465476.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 13997     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4140652..4152166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS04_RS19630 - 4142389..4143333 (-) 945 WP_107683194.1 branched-chain amino acid transaminase -
  QBS04_RS19635 ilvM 4143346..4143624 (-) 279 WP_107683193.1 acetolactate synthase 2 small subunit -
  QBS04_RS19640 ilvG 4143621..4145267 (-) 1647 WP_107683192.1 acetolactate synthase 2 catalytic subunit -
  QBS04_RS19645 comM 4145652..4147166 (+) 1515 WP_279465476.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QBS04_RS19650 - 4147293..4148192 (+) 900 WP_279465477.1 acyltransferase -
  QBS04_RS19655 - 4148199..4149164 (+) 966 WP_279465479.1 acyltransferase -
  QBS04_RS19660 - 4149089..4149595 (-) 507 WP_257724957.1 DUF523 domain-containing protein -
  QBS04_RS19665 - 4149592..4150242 (-) 651 WP_005339607.1 DNA mismatch repair protein MutT -
  QBS04_RS19670 - 4150317..4150952 (+) 636 WP_279465482.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54634.55 Da        Isoelectric Point: 7.4493

>NTDB_id=814808 QBS04_RS19645 WP_279465476.1 4145652..4147166(+) (comM) [Aeromonas veronii strain ANYA 13997]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLNEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLVARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=814808 QBS04_RS19645 WP_279465476.1 4145652..4147166(+) (comM) [Aeromonas veronii strain ANYA 13997]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACGGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAAGAGTCTCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAACTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGAATTCTCGCAGCTTCAAAACAAATACCTGCAAAATACCTGCTTGATCACGAATTTTT
GGGGGAGTTGGCCCTGACCGGCGAGATCCGCCCCGTGCTCGGGGTGCTACCCGCCGTACTCGCCTGCCGGGATGCGGGGC
GTACCCTGCTGGTACCGCGGGAGAACGGCCCGGAAGCCTCCCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAGTTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAGTACGAACTGCCGCTGCCGGATCCCCAAAGCGCGGAGAGCCTGCCAGATGT
GCCGGACCTGCAGGATGTGATCGGCCAGTCCCAGGCCAAGCGTGCACTGGAGATTGCCGCCGCTGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGTTGGCCAGCCGATTGCCCGGCATTCTGCCGCCGCTGAACGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACTCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACACCCCACCACAGCGCCTCGGCAGTGGCGCTGGTGGGTGGTGGCAGCCACCCAAGGCCCGGCGAAATATCGTTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAATTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTCGATTTTCCCGCCCGCTTCCAGCTGGTGGGAGCCATGAATCCCAG
CCCCTGCGGCCACTATGGAGATGGGCAGACCCGCTCCAGCCCGGATCAGATATTGCGCTATCTCGGCAAGCTCTCCGGCC
CCTTTCTCGATCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGCAGCCTCACCGGCAAGGCGGAGCGGGGG
GAATCGAGCCAGCAGATCCGCGATCGGGTGCTGGTGGCGAGAGAGCGTATGCTGAGCCGTAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCACCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACAGGCTGCTGTCGCGACTGCGCAGCAGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

61.952

99.603

0.617
  comM Glaesserella parasuis strain SC1401

60.947

100

0.613
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464