Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QBS11_RS19500 Genome accession   NZ_CP121851
Coordinates   4176791..4178305 (+) Length   504 a.a.
NCBI ID   WP_058056255.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 14022     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4171791..4183305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS11_RS19485 - 4173528..4174472 (-) 945 WP_058056253.1 branched-chain amino acid transaminase -
  QBS11_RS19490 ilvM 4174485..4174763 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  QBS11_RS19495 ilvG 4174760..4176406 (-) 1647 WP_058056254.1 acetolactate synthase 2 catalytic subunit -
  QBS11_RS19500 comM 4176791..4178305 (+) 1515 WP_058056255.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QBS11_RS19505 - 4178432..4179331 (+) 900 WP_005356150.1 acyltransferase -
  QBS11_RS19510 - 4179338..4180303 (+) 966 WP_058056256.1 acyltransferase -
  QBS11_RS19515 - 4180228..4180734 (-) 507 WP_058056257.1 DUF523 domain-containing protein -
  QBS11_RS19520 - 4180731..4181381 (-) 651 WP_058056258.1 DNA mismatch repair protein MutT -
  QBS11_RS19525 - 4181456..4182091 (+) 636 WP_005357452.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54656.47 Da        Isoelectric Point: 7.2612

>NTDB_id=814781 QBS11_RS19500 WP_058056255.1 4176791..4178305(+) (comM) [Aeromonas veronii strain ANYA 14022]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPQPDPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAEQSAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=814781 QBS11_RS19500 WP_058056255.1 4176791..4178305(+) (comM) [Aeromonas veronii strain ANYA 14022]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTCCGCAGTGCCCTGC
TCAACGGCAACTTCGAGTTCCCGAGCAAACACATCACCGTCAATCTGGCCCCCGCCGACCTGCCCAAGGAGGGGGGCCGC
TTCGATCTGGCCATCGCTATCGGCATTCTCGCTGCTTCCAAACAAATACCCGCAAAATACCTGCTCGATCACGAATTTTT
GGGGGAGTTGGCCCTGACCGGCGAAATTCGCCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGGC
GCACCCTGCTGGTACCGCGGGAGAACGGCCCCGAAGCTTCCCTCATTCAGGATGCCGAGGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACAGCTTGGCTGGCCGGTCAGTACGAACTGCCGCAGCCGGATCCCCAAAGCGCGGAGAGCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTTATCGGCCCGCCTGGCACCGGCAAGAGCATGTTAGCGAGCCGATTGCCCGGCATTCTGCCGCCACTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGTGGCCTCACCCCACGCGCCGGCCACTGGCACCACAGACCCTATCG
CACGCCCCACCACAGCGCCTCCGCCGTGGCGCTGGTGGGCGGTGGCAGCCACCCGCGCCCCGGCGAAATTTCGTTGGCCC
ACAACGGGGTGCTGTTTTTGGATGAATTGCCCGAATTCGAGCGCAAGGTGCTCGACTCCCTGCGTGAACCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGCCAGGTCGATTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAATCCCAG
CCCCTGTGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTGCGCTACCTCGGCAAGCTCTCCGGCC
CTTTTCTCGATCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGAGGG
GAATCGAGCCAGCAGATCCGCGATCGGGTACTGGCGGCGCGAGAGCGCATGCTGAGCCGTAACGGCAAACTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCACCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGAGCAATCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACAGGCTGCTGTCGCGATTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.221

99.802

0.631
  comM Haemophilus influenzae Rd KW20

61.265

100

0.615
  comM Vibrio campbellii strain DS40M4

61.554

99.603

0.613
  comM Glaesserella parasuis strain SC1401

60.75

100

0.611
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464