Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   QBS11_RS17315 Genome accession   NZ_CP121851
Coordinates   3717669..3718703 (-) Length   344 a.a.
NCBI ID   WP_005340354.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 14022     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3712669..3723703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS11_RS17285 glnK 3713250..3713588 (-) 339 WP_005341406.1 P-II family nitrogen regulator -
  QBS11_RS17290 arfB 3713790..3714206 (+) 417 WP_021230947.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  QBS11_RS17295 - 3714239..3714730 (+) 492 WP_058057970.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  QBS11_RS17300 - 3715090..3715515 (-) 426 WP_005340360.1 hypothetical protein -
  QBS11_RS17305 yaaA 3715710..3716483 (-) 774 WP_058057969.1 peroxide stress protein YaaA -
  QBS11_RS17310 pilU 3716531..3717640 (-) 1110 WP_058057996.1 type IVa pilus ATPase TapU Machinery gene
  QBS11_RS17315 pilT 3717669..3718703 (-) 1035 WP_005340354.1 type IVa pilus ATPase TapT Machinery gene
  QBS11_RS17320 - 3718743..3719444 (+) 702 WP_058058360.1 YggS family pyridoxal phosphate-dependent enzyme -
  QBS11_RS17325 proC 3719587..3720411 (+) 825 WP_058058361.1 pyrroline-5-carboxylate reductase -
  QBS11_RS17330 - 3720423..3720974 (+) 552 WP_005340343.1 YggT family protein -
  QBS11_RS17335 yggU 3720974..3721276 (+) 303 WP_021230942.1 DUF167 family protein YggU -
  QBS11_RS17340 - 3721320..3721739 (+) 420 WP_058057966.1 DUF4426 domain-containing protein -
  QBS11_RS17345 - 3721841..3723037 (-) 1197 WP_058057965.1 NupC/NupG family nucleoside CNT transporter -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 38273.03 Da        Isoelectric Point: 6.7440

>NTDB_id=814779 QBS11_RS17315 WP_005340354.1 3717669..3718703(-) (pilT) [Aeromonas veronii strain ANYA 14022]
MDITELLAFSVKHKASDLHLSAGVPPMIRVDGEVRKINLPALEHREVHALIYDIMNDHQRKELEENFEVDFSFEVPNLAR
FRVNAFQQARGSGAVFRTIPSTVLSLEDLDAPEIFRKIAEFPRGLVLVTGPTGSGKSTTLAAMVNYINENFHHHILTIED
PIEFVHENKRCLVNQREVHRDTKSFSNALRSALREDPDIILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGAEKDMVRSMLSESLRAVISQTLLKRIGGGRVAAHEIMMGIPAVRNLIREDKIAQLYSVIQTGMTHGMQTMDQSL
KQLVSRGVVASLDAKAKAVDPNSI

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=814779 QBS11_RS17315 WP_005340354.1 3717669..3718703(-) (pilT) [Aeromonas veronii strain ANYA 14022]
ATGGATATCACAGAGTTATTGGCTTTCAGTGTAAAGCATAAAGCCTCGGATCTACACCTCTCGGCCGGGGTTCCCCCGAT
GATCAGGGTTGATGGTGAGGTTCGCAAGATCAATTTGCCCGCCCTGGAACATCGGGAAGTGCATGCCCTCATTTACGACA
TCATGAACGACCATCAGCGCAAGGAGCTGGAGGAGAACTTCGAGGTCGACTTCTCGTTCGAGGTGCCCAATCTGGCCCGT
TTCCGGGTCAACGCCTTCCAGCAGGCGCGCGGCTCGGGCGCGGTATTTCGTACCATCCCCAGCACGGTGCTGAGCCTCGA
AGATCTCGATGCGCCGGAGATCTTCCGCAAGATCGCCGAGTTCCCGCGGGGTCTGGTGTTGGTGACCGGCCCGACCGGTT
CCGGTAAGTCGACCACCCTGGCGGCCATGGTCAACTACATCAACGAGAACTTCCATCACCATATCCTCACCATCGAAGAC
CCCATCGAATTCGTCCACGAAAACAAGCGCTGTCTGGTGAACCAGCGGGAAGTGCACCGCGATACCAAGAGCTTCAGCAA
CGCTCTGCGCTCGGCCCTGCGGGAAGACCCGGACATCATTCTGGTGGGCGAGATGCGCGACCTTGAGACCATTCGTCTGG
CCATGACCGCCGCCGAAACTGGCCATCTGGTGTTTGGCACCCTGCACACCTCGTCGGCGGCCAAGACCATAGACCGTATC
ATCGACGTCTTCCCCGGTGCGGAGAAGGACATGGTGCGTTCCATGCTCTCCGAATCCCTGCGGGCAGTTATCTCCCAGAC
CCTGCTCAAGCGTATTGGCGGTGGCCGGGTTGCGGCCCACGAGATCATGATGGGCATTCCGGCGGTGCGTAACCTCATTC
GGGAGGACAAGATTGCCCAGCTCTACTCGGTGATCCAGACCGGGATGACCCACGGCATGCAGACCATGGATCAGAGCCTC
AAGCAGCTGGTGAGTCGTGGCGTGGTGGCATCCCTCGATGCCAAGGCCAAGGCCGTCGATCCCAACAGCATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

77.326

100

0.773
  pilT Acinetobacter baylyi ADP1

77.551

99.709

0.773
  pilT Acinetobacter baumannii D1279779

77.035

100

0.77
  pilT Acinetobacter baumannii strain A118

77.035

100

0.77
  pilT Pseudomonas stutzeri DSM 10701

76.163

100

0.762
  pilT Pseudomonas aeruginosa PAK

75.291

100

0.753
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

75.964

97.965

0.744
  pilT Vibrio cholerae strain A1552

75.964

97.965

0.744
  pilT Legionella pneumophila strain Lp02

72.941

98.837

0.721
  pilT Legionella pneumophila strain ERS1305867

72.941

98.837

0.721
  pilT Neisseria meningitidis 8013

69.855

100

0.701
  pilT Neisseria gonorrhoeae MS11

69.565

100

0.698
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.754

99.419

0.515
  pilU Vibrio cholerae strain A1552

42.899

100

0.43
  pilU Pseudomonas stutzeri DSM 10701

40.58

100

0.407
  pilU Acinetobacter baylyi ADP1

40.462

100

0.407