Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QBS11_RS18010 Genome accession   NZ_CP121851
Coordinates   3863101..3863688 (+) Length   195 a.a.
NCBI ID   WP_069529269.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 14022     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3858101..3868688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS11_RS17985 - 3859616..3860137 (-) 522 WP_279491398.1 curlin -
  QBS11_RS17990 - 3860324..3861163 (-) 840 WP_005355003.1 CsgG/HfaB family protein -
  QBS11_RS17995 - 3861171..3861572 (-) 402 WP_042063493.1 curli assembly protein CsgF -
  QBS11_RS18000 - 3861584..3862027 (-) 444 WP_005355005.1 curli production assembly/transport protein CsgE -
  QBS11_RS18005 - 3862027..3862674 (-) 648 WP_042080923.1 LuxR C-terminal-related transcriptional regulator -
  QBS11_RS18010 ssb 3863101..3863688 (+) 588 WP_069529269.1 single-stranded DNA-binding protein Machinery gene
  QBS11_RS18015 - 3863849..3865042 (+) 1194 WP_279491399.1 site-specific integrase -
  QBS11_RS18020 - 3865044..3866546 (+) 1503 WP_279491400.1 site-specific integrase -
  QBS11_RS18025 - 3866543..3868606 (+) 2064 WP_279491401.1 integrase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21556.09 Da        Isoelectric Point: 5.9301

>NTDB_id=814780 QBS11_RS18010 WP_069529269.1 3863101..3863688(+) (ssb) [Aeromonas veronii strain ANYA 14022]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
SMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=814780 QBS11_RS18010 WP_069529269.1 3863101..3863688(+) (ssb) [Aeromonas veronii strain ANYA 14022]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCATCGCGTCGTCTTCATGGGCAAGTTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAAGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAAACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AGCATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.368

98.974

0.528
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456