Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QBS09_RS13985 Genome accession   NZ_CP121848
Coordinates   2935662..2937176 (-) Length   504 a.a.
NCBI ID   WP_100647101.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 14430     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2930662..2942176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS09_RS13960 - 2931879..2932514 (-) 636 WP_005357452.1 nicotinamidase -
  QBS09_RS13965 - 2932589..2933239 (+) 651 WP_201913387.1 DNA mismatch repair protein MutT -
  QBS09_RS13970 - 2933236..2933739 (+) 504 WP_201913385.1 DUF523 domain-containing protein -
  QBS09_RS13975 - 2933664..2934629 (-) 966 WP_201913383.1 acyltransferase -
  QBS09_RS13980 - 2934636..2935535 (-) 900 WP_005339610.1 acyltransferase -
  QBS09_RS13985 comM 2935662..2937176 (-) 1515 WP_100647101.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QBS09_RS13990 ilvG 2937561..2939207 (+) 1647 WP_201913381.1 acetolactate synthase 2 catalytic subunit -
  QBS09_RS13995 ilvM 2939204..2939482 (+) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  QBS09_RS14000 - 2939495..2940439 (+) 945 WP_111900975.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54579.47 Da        Isoelectric Point: 7.4493

>NTDB_id=814723 QBS09_RS13985 WP_100647101.1 2935662..2937176(-) (comM) [Aeromonas veronii strain ANYA 14430]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=814723 QBS09_RS13985 WP_100647101.1 2935662..2937176(-) (comM) [Aeromonas veronii strain ANYA 14430]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAATATGGTCGGCCTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACCGTCAATCTGGCCCCCGCCGACCTACCCAAGGAGGGAGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTTGCCGCTTCCAAGCAGATACCTGCAAAATATCTGCTCGATCATGAATTTTT
AGGGGAATTGGCCCTGACCGGAGAGATCCGCCCTGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGGC
GCACCCTGCTGGTACCGCGAGAGAACGGCCCGGAAGCCTCTCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAACTG
CTGGCCGTCACCGCTTGGCTGGCAGGCCAATACGAGCTGCCGCTGCCGGATCCCCAAAGCGCGGAGAGCCTGCCCGATGT
ACCGGATCTGCAGGATGTGATCGGCCAGTCTCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGTCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCGAGCCGTCTGCCCGGCATCTTGCCGCCGCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCCCACCACAGTGCCTCAGCGGTGGCGCTGGTGGGCGGTGGCAGCCACCCGCGGCCCGGCGAAATTTCGCTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAATTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAATCCCAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGATCTGACGGTGGAAGTGCCACTGCTACCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCTAGTCAGCAGATCCGCGATCGAGTGCTGGCGGCACGGGAGCGCATGCTGAGCCGCAACGGTAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCGCCGCAAGATGCCGAATTTTTGGAGAATGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGACAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCACTCGGTTACAGGGCCATGGACAGGCTGCTGTCGCGACTGCGCAGCAGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.947

100

0.613
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464