Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QBS03_RS18385 Genome accession   NZ_CP121846
Coordinates   3946826..3947413 (+) Length   195 a.a.
NCBI ID   WP_005340181.1    Uniprot ID   A0A165S798
Organism   Aeromonas veronii strain ANYA 15110     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3941826..3952413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS03_RS18360 - 3943340..3943861 (-) 522 WP_064341412.1 curlin -
  QBS03_RS18365 - 3944049..3944888 (-) 840 WP_005355003.1 CsgG/HfaB family protein -
  QBS03_RS18370 - 3944896..3945297 (-) 402 WP_129503196.1 curli assembly protein CsgF -
  QBS03_RS18375 - 3945309..3945695 (-) 387 WP_013723429.1 curli production assembly/transport protein CsgE -
  QBS03_RS18380 - 3945752..3946399 (-) 648 WP_042080923.1 LuxR C-terminal-related transcriptional regulator -
  QBS03_RS18385 ssb 3946826..3947413 (+) 588 WP_005340181.1 single-stranded DNA-binding protein Machinery gene
  QBS03_RS18390 - 3947564..3948307 (+) 744 WP_279487312.1 transporter substrate-binding domain-containing protein -
  QBS03_RS18395 - 3948380..3948505 (-) 126 WP_019445191.1 hypothetical protein -
  QBS03_RS18400 - 3948966..3949868 (+) 903 WP_279486169.1 cation diffusion facilitator family transporter -
  QBS03_RS18405 yjbD 3950015..3950299 (+) 285 WP_005340165.1 DUF3811 domain-containing protein -
  QBS03_RS18410 cspA 3950894..3951106 (+) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21583.11 Da        Isoelectric Point: 5.9301

>NTDB_id=814698 QBS03_RS18385 WP_005340181.1 3946826..3947413(+) (ssb) [Aeromonas veronii strain ANYA 15110]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=814698 QBS03_RS18385 WP_005340181.1 3946826..3947413(+) (ssb) [Aeromonas veronii strain ANYA 15110]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCATCGCGTCGTCTTCATGGGCAAGCTGGCAGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAGACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCACAGCAAAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCACCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A165S798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456