Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   RYX44_RS29205 Genome accession   NZ_CP136432
Coordinates   6191595..6192119 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain XM8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6186595..6197119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX44_RS29190 aroB 6187711..6188817 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  RYX44_RS29195 aroK 6188867..6189385 (-) 519 WP_003095833.1 shikimate kinase AroK -
  RYX44_RS29200 pilQ 6189397..6191541 (-) 2145 WP_003123619.1 type 4a pilus secretin PilQ Machinery gene
  RYX44_RS29205 comL/pilP 6191595..6192119 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  RYX44_RS29210 pilO 6192116..6192739 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  RYX44_RS29215 pilN 6192736..6193332 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  RYX44_RS29220 pilM 6193332..6194396 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  RYX44_RS29225 - 6194581..6197052 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=814697 RYX44_RS29205 WP_003095836.1 6191595..6192119(-) (comL/pilP) [Pseudomonas aeruginosa strain XM8]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=814697 RYX44_RS29205 WP_003095836.1 6191595..6192119(-) (comL/pilP) [Pseudomonas aeruginosa strain XM8]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCTGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362