Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QBS03_RS00415 Genome accession   NZ_CP121846
Coordinates   85858..87372 (-) Length   504 a.a.
NCBI ID   WP_279486372.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 15110     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 80858..92372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS03_RS00390 - 82072..82707 (-) 636 WP_279464005.1 nicotinamidase -
  QBS03_RS00395 - 82782..83432 (+) 651 WP_279486369.1 DNA mismatch repair protein MutT -
  QBS03_RS00400 - 83429..83935 (+) 507 WP_129504936.1 DUF523 domain-containing protein -
  QBS03_RS00405 - 83860..84825 (-) 966 WP_279486370.1 acyltransferase -
  QBS03_RS00410 - 84832..85731 (-) 900 WP_279486371.1 acyltransferase -
  QBS03_RS00415 comM 85858..87372 (-) 1515 WP_279486372.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QBS03_RS00420 ilvG 87757..89403 (+) 1647 WP_279486373.1 acetolactate synthase 2 catalytic subunit -
  QBS03_RS00425 ilvM 89400..89690 (+) 291 WP_042079763.1 acetolactate synthase 2 small subunit -
  QBS03_RS00430 - 89703..90648 (+) 946 Protein_74 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54645.53 Da        Isoelectric Point: 7.6716

>NTDB_id=814678 QBS03_RS00415 WP_279486372.1 85858..87372(-) (comM) [Aeromonas veronii strain ANYA 15110]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDQQSSESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGRWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=814678 QBS03_RS00415 WP_279486372.1 85858..87372(-) (comM) [Aeromonas veronii strain ANYA 15110]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAACTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGAGGCCGC
TTCGATCTGGCTATCGCTATCGGCATTCTCGCCGCTTCCAAGCAGATACCGGCAAAATATCTGCTCGATCACGAATTTTT
AGGGGAATTGGCCCTGACCGGAGAGATCCGCCCTGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGGC
GCACCCTGCTGGTGCCGCGGGAGAACGGCCCGGAAGCCTCTCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAGTTG
CTGGCCGTTACCGCCTGGCTGGCCGGTCAGTACGAACTGCCGCTGCCGGATCAACAAAGCTCGGAGAGCCTGCCCGATGT
GCCGGACCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCGAGCCGATTGCCCGGCATCTTGCCGCCGCTCAGCGAGCAG
GAGGCACAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACTCCGCGCGCCGGTCGCTGGCACCACAGACCCTATCG
CACGCCCCACCACAGTGCCTCCGCAGTGGCGCTGGTGGGTGGTGGCAGCCACCCGCGGCCCGGCGAAATTTCGCTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAATTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATTAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAATCCCAG
CCCCTGCGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTGCGCTACCTCGGCAAACTCTCCGGCC
CCTTTCTCGACCGCTTTGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCTAGTCAGCAGATCCGCGATCGAGTGCTGGCGGCACGGGAGCGCATGCTGAGCCGCAACGGTAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCACCGCAAGATGCCGAATTTTTGGAGAATGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGACAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCACTCGGTTACAGGGCCATGGACAGGCTGCTGTCGCGACTGCGCAGCAGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.889

100

0.639
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

61.952

99.603

0.617
  comM Glaesserella parasuis strain SC1401

60.552

100

0.609
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464