Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QBS37_RS04720 Genome accession   NZ_CP121845
Coordinates   926804..928318 (+) Length   504 a.a.
NCBI ID   WP_257724954.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 15694     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 921804..933318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS37_RS04705 - 923541..924485 (-) 945 WP_279476567.1 branched-chain amino acid transaminase -
  QBS37_RS04710 ilvM 924498..924776 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  QBS37_RS04715 ilvG 924773..926419 (-) 1647 WP_279476569.1 acetolactate synthase 2 catalytic subunit -
  QBS37_RS04720 comM 926804..928318 (+) 1515 WP_257724954.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QBS37_RS04725 - 928445..929344 (+) 900 WP_279476572.1 acyltransferase -
  QBS37_RS04730 - 929351..930316 (+) 966 WP_257724956.1 acyltransferase -
  QBS37_RS04735 - 930241..930747 (-) 507 WP_257724957.1 DUF523 domain-containing protein -
  QBS37_RS04740 - 930744..931394 (-) 651 WP_005339607.1 DNA mismatch repair protein MutT -
  QBS37_RS04745 - 931469..932104 (+) 636 WP_005357452.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54574.41 Da        Isoelectric Point: 7.4493

>NTDB_id=814654 QBS37_RS04720 WP_257724954.1 926804..928318(+) (comM) [Aeromonas veronii strain ANYA 15694]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDQQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSAQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQSAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=814654 QBS37_RS04720 WP_257724954.1 926804..928318(+) (comM) [Aeromonas veronii strain ANYA 15694]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACGGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAAGAGTCTCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAACTTCGAGTTCCCGAGCAAACACATCACAGTCAATCTGGCCCCCGCCGACCTGCCCAAGGAGGGTGGCCGT
TTCGATCTGGCAATCGCCATCGGTATTCTTGCCGCTTCCAAGCAGATACCTGCAAAATACCTGCTTGATCACGAATTTTT
AGGCGAGTTGGCCCTGACCGGCGAGATCCGCCCCGTGCTCGGTGTGCTGCCCGCCGTACTCGCCTGCCGCGATGCGGGGC
GCACCCTGCTGGTGCCGCGGGAGAACGGCCCCGAAGCTTCTCTTATTCAGGATGCCGAGGTGCGCACCGCTCACCAGCTG
TTGGCCGTCACCGCCTGGCTGGCCGGTCAGTACGAACTGCCGCTGCCGGATCAACAAAGCGCGGAGAGCCTGCCCGATGT
ACCGGATCTACAGGATGTGATCGGCCAGTCACAGGCCAAACGGGCGCTGGAGATTGCCGCCGCCGGCAGCCACAACCTAT
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCGAGCCGTCTGCCCGGCATTCTGCCGCCGCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCAATCCACTCCATCGGCGGCCTCACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACACCCCACCACAGTGCCTCGGCAGTGGCGCTGGTGGGCGGTGGCAGCCACCCGCGGCCCGGCGAAATTTCGTTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCTCGCTTCCAGCTGGTCGGCGCCATGAATCCCAG
CCCCTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAACTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCTAGTCAACAGATCCGCGATCGGGTACTGGCGGCGCGGGAGCGCATGCTGAGCCGTAACGGCAAGCTCAACAACCT
GCTTGATAGCCGCGAGATAGAGGATATTTGCCGCTTATCGGCGCAAGATGCCGAGTTTTTGGAGAATGCCATCCAGAAGC
TGGGGCTCAGTATCCGGGCCTGGCACCGCATTTTGCGGGTGTCACGCACCATCGCCGATCTGGCGGGGCAATCCGCCATC
GGCAAGGAGCATCTCATCGAGGCGCTCGGTTACAGGGCCATGGACCGGCTGCTGTCGCGACTGCGCAGCAGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Glaesserella parasuis strain SC1401

61.144

100

0.615
  comM Vibrio campbellii strain DS40M4

61.753

99.603

0.615
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464