Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QBS15_RS19320 Genome accession   NZ_CP121842
Coordinates   4167597..4169111 (+) Length   504 a.a.
NCBI ID   WP_159157981.1    Uniprot ID   A0A653LAZ2
Organism   Aeromonas veronii strain ANYA 16702     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4162597..4174111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS15_RS19305 - 4164334..4165278 (-) 945 WP_279461199.1 branched-chain amino acid transaminase -
  QBS15_RS19310 ilvM 4165291..4165569 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  QBS15_RS19315 ilvG 4165566..4167212 (-) 1647 WP_279461201.1 acetolactate synthase 2 catalytic subunit -
  QBS15_RS19320 comM 4167597..4169111 (+) 1515 WP_159157981.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QBS15_RS19325 - 4169238..4170137 (+) 900 WP_279461205.1 acyltransferase -
  QBS15_RS19330 - 4170144..4171109 (+) 966 WP_129504935.1 acyltransferase -
  QBS15_RS19335 - 4171034..4171540 (-) 507 WP_279461207.1 DUF523 domain-containing protein -
  QBS15_RS19340 - 4171537..4172187 (-) 651 WP_005339607.1 DNA mismatch repair protein MutT -
  QBS15_RS19345 - 4172262..4172897 (+) 636 WP_216949835.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54509.42 Da        Isoelectric Point: 7.6884

>NTDB_id=814619 QBS15_RS19320 WP_159157981.1 4167597..4169111(+) (comM) [Aeromonas veronii strain ANYA 16702]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRARVLAARERMLSRNGKLNNLLDSREIEDICRLSAQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=814619 QBS15_RS19320 WP_159157981.1 4167597..4169111(+) (comM) [Aeromonas veronii strain ANYA 16702]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTCCGCAGTGCCCTGC
TCAACGGCAACTTCGAGTTCCCGAGCAAACACATCACCGTCAATTTGGCCCCCGCCGATCTGCCCAAGGAGGGAGGCCGT
TTTGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCGGCAAAATATCTGCTCGATCACGAATTTTT
AGGGGAGTTGGCCCTGACCGGCGAAATTCGTCCCGTGCTCGGGGTACTGCCTGCCGTACTCGCCTGCCGGGATGCGGGGC
GCACCCTGCTGGTACCGCGAGAGAACGGCCCGGAAGCCTCTCTCATTCAAGATGCCGAGGTGCGCACCGCCCACCAGTTG
CTGGCCGTCACCGCCTGGCTGGCGGGCCAGTACGAGCTGCCGCTGCCGGATCCCCAAAGCGCGGAGAGCCTGCCCGACGT
ACCAGATCTGCAGGATGTGATTGGCCAGTCTCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCTTGCCCGGCATTCTGCCACCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCGCGCGCTGGTCACTGGCACCACAGACCCTATCG
CACACCCCACCACAGTGCCTCAGCGGTGGCGCTGGTGGGCGGTGGCAGCCACCCGCGGCCCGGCGAAATTTCGCTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAATTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTCACCGGCAAGGCGGAGCGAGGG
GAGTCTAGCCAGCAGATCCGCGCTCGAGTGCTGGCGGCACGGGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAACCT
GCTGGATAGTCGTGAGATAGAGGATATTTGCCGCTTATCGGCGCAAGATGCCGAATTTTTGGAGAATGCTATCCAGAAGC
TGGGGCTCAGCATCCGGGCTTGGCATCGCATTTTGCGGGTGTCGCGTACCATCGCCGATCTGGCCGGACAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCACTCGGTTACAGGGCCATGGACAGGCTGCTGTCGCGATTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653LAZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.947

100

0.613
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464