Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QBS12_RS01370 Genome accession   NZ_CP121841
Coordinates   287420..288934 (+) Length   504 a.a.
NCBI ID   WP_266135671.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 18196     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 282420..293934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS12_RS01355 - 284157..285101 (-) 945 WP_279464001.1 branched-chain amino acid transaminase -
  QBS12_RS01360 ilvM 285114..285392 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  QBS12_RS01365 ilvG 285389..287035 (-) 1647 WP_279464002.1 acetolactate synthase 2 catalytic subunit -
  QBS12_RS01370 comM 287420..288934 (+) 1515 WP_266135671.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QBS12_RS01375 - 289061..289960 (+) 900 WP_043823224.1 acyltransferase -
  QBS12_RS01380 - 289967..290932 (+) 966 WP_279464003.1 acyltransferase -
  QBS12_RS01385 - 290857..291363 (-) 507 WP_279464004.1 DUF523 domain-containing protein -
  QBS12_RS01390 - 291360..292010 (-) 651 WP_005339607.1 DNA mismatch repair protein MutT -
  QBS12_RS01395 - 292085..292720 (+) 636 WP_279464005.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54634.55 Da        Isoelectric Point: 7.4493

>NTDB_id=814570 QBS12_RS01370 WP_266135671.1 287420..288934(+) (comM) [Aeromonas veronii strain ANYA 18196]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQNAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLVARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=814570 QBS12_RS01370 WP_266135671.1 287420..288934(+) (comM) [Aeromonas veronii strain ANYA 18196]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTAGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGAGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCTCCCGCCGATCTACCCAAGGAGGGGGGCCGT
TTTGATCTGGCCATCGCCATCGGTATTCTCGCTGCTTCCAAGCAGATACCGGCAAAATATCTGCTCGATCACGAATTTTT
AGGGGAATTGGCCCTGACCGGAGAGATCCGCCCTGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGGC
GCACCCTGCTGGTACCGCGAGAGAACGGCCCGGAAGCCTCCCTCATCCAGGATGCCGAGGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACCGCCTGGCTGGCGGGCCAGTACGAACTGCCGCTGCCGGATCCCCAAAACGCGGAAAGCCTGCCCGATGT
ACCGGATCTGCAGGATGTGATCGGTCAGTCTCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACTGGCAAGAGCATGCTGGCGAGCCGCCTTCCCGGCATCTTGCCGCCGCTGAGCGAGCAG
GAGGCACAGCAGACCGCCGCCATCCACTCCATCGGTGGCCTCACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCGCACCACAGTGCCTCGGCGGTGGCGCTGGTGGGAGGCGGCAGCCACCCAAGACCCGGCGAAATATCGCTGGCCC
ACAACGGAGTGCTGTTTCTCGACGAGCTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATTAGCCGGGCCGCCCGTCAGGTGGATTTCCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAATCCCAG
CCCCTGTGGCCACTATGGCGATGGCCAAACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGA
GAGTCGAGCCAGCAGATCCGCGATCGGGTGCTGGTGGCGAGAGAGCGCATGCTGAGTCGCAACGGCAAGCTCAACAACCT
GCTGGATAGCCGCGAGATTGAGGATATTTGCCGACTATCACCACAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACAGGCTGCTGTCGCGACTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

61.144

100

0.615
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464