Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QBS27_RS18855 Genome accession   NZ_CP121840
Coordinates   4078764..4080278 (+) Length   504 a.a.
NCBI ID   WP_236353790.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 18197     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4073764..4085278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS27_RS18840 - 4075501..4076445 (-) 945 WP_265774280.1 branched-chain amino acid transaminase -
  QBS27_RS18845 ilvM 4076458..4076736 (-) 279 WP_005339613.1 acetolactate synthase 2 small subunit -
  QBS27_RS18850 ilvG 4076733..4078379 (-) 1647 WP_279489917.1 acetolactate synthase 2 catalytic subunit -
  QBS27_RS18855 comM 4078764..4080278 (+) 1515 WP_236353790.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QBS27_RS18860 - 4080405..4081304 (+) 900 WP_236353788.1 acyltransferase -
  QBS27_RS18865 - 4081311..4082276 (+) 966 WP_236353781.1 acyltransferase -
  QBS27_RS18870 - 4082201..4082707 (-) 507 WP_279489920.1 DUF523 domain-containing protein -
  QBS27_RS18875 - 4082704..4083354 (-) 651 WP_005339607.1 DNA mismatch repair protein MutT -
  QBS27_RS18880 - 4083429..4084064 (+) 636 WP_042055347.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54558.37 Da        Isoelectric Point: 7.4493

>NTDB_id=814563 QBS27_RS18855 WP_236353790.1 4078764..4080278(+) (comM) [Aeromonas veronii strain ANYA 18197]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPQPDPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSAQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQSAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=814563 QBS27_RS18855 WP_236353790.1 4078764..4080278(+) (comM) [Aeromonas veronii strain ANYA 18197]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACAGTCAATCTGGCCCCCGCCGACCTGCCCAAGGAGGGTGGCCGT
TTCGATCTGGCCATCGCCATCGGTATTCTTGCCGCTTCCAAGCAGATACCTGCAAAATATCTGCTCGATCACGAGTTTTT
AGGGGAATTGGCCCTGACCGGAGAGATTCGCCCTGTGCTCGGGGTGCTGCCTGCCGTACTCGCCTGCCGGGATGCGGGAC
GCACCCTGCTGGTACCGCGGGAGAACGGCCCCGAAGCTTCCCTCATTCAGGATGCCGAGGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACAGCTTGGCTGGCCGGTCAGTACGAACTGCCGCAGCCGGATCCCCAAAGCGCGGAGAGCCTGCCCGATGT
GCCTGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTTATCGGCCCGCCTGGCACCGGCAAGAGCATGTTAGCGAGCCGATTGCCCGGCATTCTGCCGCCACTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGTGGCCTCACCCCACGCGCCGGCCACTGGCACCACAGACCCTATCG
CACGCCCCACCACAGCGCCTCCGCCGTGGCGCTGGTGGGCGGTGGCAGCCACCCGCGCCCCGGCGAAATTTCGTTGGCCC
ACAACGGGGTGCTGTTTTTGGATGAATTGCCCGAATTCGAGCGCAAGGTGCTCGATTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGTCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTTCAGCTGGTTGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAACTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACAGTTGAGGTACCGCTGCTGCCCAAGGGGAGCCTCACCGGCAAGGCGGAGCGAGGG
GAGTCTAGCCAGCAGATCCGCGATCGGGTGCTGGCGGCACGAGAGCGTATGCTGAGCCGCAACGGCAAGCTCAACAACCT
GCTGGATAGCCGCGAGATAGAGGATATTTGCCGACTATCAGCGCAAGATGCCGAATTTTTGGAGAATGCCATCCAGAAGC
TGGGGCTCAGTATCCGGGCCTGGCACCGCATTTTGCGGGTGTCACGCACCATCGCCGATCTGGCGGGGCAATCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACCGGCTGCTGTCGCGACTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.419

99.802

0.633
  comM Haemophilus influenzae Rd KW20

61.462

100

0.617
  comM Vibrio campbellii strain DS40M4

61.753

99.603

0.615
  comM Glaesserella parasuis strain SC1401

60.947

100

0.613
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464