Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QBS07_RS05455 Genome accession   NZ_CP121837
Coordinates   1135339..1136853 (-) Length   504 a.a.
NCBI ID   WP_043823222.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 18263     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1130339..1141853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS07_RS05430 - 1131553..1132188 (-) 636 WP_005357452.1 nicotinamidase -
  QBS07_RS05435 - 1132263..1132913 (+) 651 WP_005339607.1 DNA mismatch repair protein MutT -
  QBS07_RS05440 - 1132910..1133416 (+) 507 WP_021231509.1 DUF523 domain-containing protein -
  QBS07_RS05445 - 1133341..1134306 (-) 966 WP_021231508.1 acyltransferase -
  QBS07_RS05450 - 1134313..1135212 (-) 900 WP_005356150.1 acyltransferase -
  QBS07_RS05455 comM 1135339..1136853 (-) 1515 WP_043823222.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QBS07_RS05460 ilvG 1137238..1138884 (+) 1647 WP_279488699.1 acetolactate synthase 2 catalytic subunit -
  QBS07_RS05465 ilvM 1138881..1139159 (+) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  QBS07_RS05470 - 1139172..1140116 (+) 945 WP_279488700.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54606.50 Da        Isoelectric Point: 7.4493

>NTDB_id=814523 QBS07_RS05455 WP_043823222.1 1135339..1136853(-) (comM) [Aeromonas veronii strain ANYA 18263]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQNAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=814523 QBS07_RS05455 WP_043823222.1 1135339..1136853(-) (comM) [Aeromonas veronii strain ANYA 18263]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGAGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCTCCCGCCGATCTACCCAAGGAGGGGGGCCGC
TTCGATCTGGCCATCGCCATCGGCATTCTCGCTGCTTCCAAGCAGATACCGGCAAAATACCTGCTCGATCATGAATTTTT
GGGGGAATTGGCCCTGACCGGCGAAATTCGCCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGAC
GCACCCTGCTGGTACCGCGGGAGAACGGCCCGGAAGCCTCTCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCAGGACAATACGAACTGCCGCTGCCGGATCCCCAAAACGCGGAGAGCCTGCCCGATGT
ACCGGATCTGCAGGATGTGATTGGCCAGTCTCAGGCCAAGCGAGCGCTAGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCTTGCCCGGCATCTTGCCGCCGCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCCCACCACAGTGCCTCGGCGGTGGCGCTGGTGGGCGGTGGCAGCCACCCGCGGCCCGGCGAGATTTCGCTGGCCC
ACAACGGAGTACTTTTTCTCGACGAGCTACCCGAATTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCACTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCTCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGATCTGACTGTGGAAGTGCCACTGCTACCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCTAGTCAGCAGATCCGCGATCGGGTGCTGGCGGCGCGAGAGCGCATGCTGAGCCGTAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCACCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACCGGCTGCTGTCGCGATTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

61.144

100

0.615
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464