Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QBS23_RS15845 Genome accession   NZ_CP121833
Coordinates   3388202..3389716 (+) Length   504 a.a.
NCBI ID   WP_279500244.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 18644     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3383202..3394716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS23_RS15830 - 3384939..3385883 (-) 945 WP_279500237.1 branched-chain amino acid transaminase -
  QBS23_RS15835 ilvM 3385896..3386174 (-) 279 WP_279500240.1 acetolactate synthase 2 small subunit -
  QBS23_RS15840 ilvG 3386171..3387817 (-) 1647 WP_279500242.1 acetolactate synthase 2 catalytic subunit -
  QBS23_RS15845 comM 3388202..3389716 (+) 1515 WP_279500244.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QBS23_RS15850 - 3389843..3390742 (+) 900 WP_279500246.1 acyltransferase -
  QBS23_RS15855 - 3390749..3391714 (+) 966 WP_064338984.1 acyltransferase -
  QBS23_RS15860 - 3391639..3392145 (-) 507 WP_199427676.1 DUF523 domain-containing protein -
  QBS23_RS15865 - 3392142..3392792 (-) 651 WP_064338986.1 hypothetical protein -
  QBS23_RS15870 - 3392867..3393502 (+) 636 WP_108541466.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54584.44 Da        Isoelectric Point: 7.2611

>NTDB_id=814471 QBS23_RS15845 WP_279500244.1 3388202..3389716(+) (comM) [Aeromonas veronii strain ANYA 18644]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDQQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSVQDAEFLENAIQKLGLSIQAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=814471 QBS23_RS15845 WP_279500244.1 3388202..3389716(+) (comM) [Aeromonas veronii strain ANYA 18644]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGAGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCTCCCGCCGATCTACCCAAGGAGGGGGGCCGC
TTCGATCTGGCCATCGCCATCGGCATTCTCGCTGCTTCCAAGCAAATACCAGCAAAATACCTGCTCGATCACGAATTTTT
AGGCGAGTTGGCTCTGACCGGCGAAATTCGCCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGCGATGCGGGAC
GCACCCTGCTGGTACCGCGGGAGAACGGCCCGGAAGCTTCCCTCATTCAGGATGCAGAGGTGCGCACCGCTCACCAACTG
CTGGCCGTCACCGCCTGGTTGGCAGGCCAATACGAACTGCCACTGCCGGATCAACAAAGCGCGGAGAGCCTGCCCGATGT
ACCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAAATCGCAGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGTTGGCCAGCCGTCTGCCCGGCATTCTGCCACCGCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGAGGTCTCACCCCGCGCGCTGGTCACTGGCACCACAGACCCTATCG
CACGCCCCACCACAGCGCCTCGGCGGTGGCGCTGGTGGGCGGCGGCAGCCACCCGCGGCCCGGCGAAATTTCGTTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAATTGCCCGAATTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTCGATTTTCCCGCTCGCTTCCAGCTGGTGGGCGCCATGAATCCCAG
CCCCTGCGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAACTCTCTGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTCACCGGCAAGGCGGAGCGAGGG
GAGTCGAGCCAACAGATCCGCGATCGGGTGCTGGCGGCACGGGAGCGCATGCTGAGCCGTAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCGGTGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCAGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACAGGCTGCTGTCGCGACTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Haemophilus influenzae Rd KW20

61.462

100

0.617
  comM Vibrio campbellii strain DS40M4

61.753

99.603

0.615
  comM Glaesserella parasuis strain SC1401

60.947

100

0.613
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.462