Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QBS19_RS05785 Genome accession   NZ_CP121832
Coordinates   1079589..1081103 (-) Length   504 a.a.
NCBI ID   WP_279460194.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 18661     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1074589..1086103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS19_RS05760 - 1075803..1076438 (-) 636 WP_005357452.1 nicotinamidase -
  QBS19_RS05765 - 1076513..1077163 (+) 651 WP_005339607.1 DNA mismatch repair protein MutT -
  QBS19_RS05770 - 1077160..1077666 (+) 507 WP_279460192.1 DUF523 domain-containing protein -
  QBS19_RS05775 - 1077591..1078556 (-) 966 WP_279460193.1 acyltransferase -
  QBS19_RS05780 - 1078563..1079462 (-) 900 WP_043823224.1 acyltransferase -
  QBS19_RS05785 comM 1079589..1081103 (-) 1515 WP_279460194.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QBS19_RS05790 ilvG 1081488..1083134 (+) 1647 WP_279460195.1 acetolactate synthase 2 catalytic subunit -
  QBS19_RS05795 ilvM 1083131..1083409 (+) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  QBS19_RS05800 - 1083422..1084366 (+) 945 WP_279460196.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54566.52 Da        Isoelectric Point: 7.4493

>NTDB_id=814442 QBS19_RS05785 WP_279460194.1 1079589..1081103(-) (comM) [Aeromonas veronii strain ANYA 18661]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSLQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSVQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=814442 QBS19_RS05785 WP_279460194.1 1079589..1081103(-) (comM) [Aeromonas veronii strain ANYA 18661]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGAGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCTCCCGCCGATCTACCCAAGGAGGGGGGCCGC
TTCGATCTGGCCATCGCCATCGGCATTCTCGCTGCTTCCAAGCAGATACCGGCAAAATACCTGCTCGATCATGAATTTTT
GGGGGAATTGGCCCTGACCGGCGAAATTCGCCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGAC
GCACCCTGCTGGTTCCGCGGGAGAACGGCCCGGAAGCCTCTCTCATTCAGGATGCCGAGGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACAGCCTGGCTGGCAGGCCAGTACGAACTACCACTGCCAGATCCCCAAAGCGCTGAGAGCCTGCCCGATGT
GCCGGACCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACTGGCAAGAGCATGCTGGCGAGCCGACTGCCCGGCATCTTGCCGCCGCTGAGCGAGCAG
GAAGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCACGCGCCGGCCACTGGCACCACAGACCCTATCG
CACGCCCCACCACAGTGCCTCCGCAGTGGCGCTGGTGGGTGGTGGCAGCCACCCGCGGCCCGGCGAAATATCGTTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAATTCGAGCGCAAGGTGCTCGACTCCTTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTCCCCGCCCGCTTCCAGCTGGTGGGCGCAATGAATCCTAG
CCCCTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAACTCTCCGGCC
CCTTTCTCGACCGCTTTGACCTGACGGTGGAGGTGCCACTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCTAGCCTGCAGATCCGCGATCGAGTGCTGGCGGCACGGGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCGGTGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGCTACCGGGCCATGGATCGGCTGCTGTCGCGGCTGCGCAGCAGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.947

100

0.613
  comM Legionella pneumophila str. Paris

51.19

100

0.512
  comM Legionella pneumophila strain ERS1305867

51.19

100

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464