Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QBS33_RS03415 Genome accession   NZ_CP121816
Coordinates   699154..700668 (+) Length   504 a.a.
NCBI ID   WP_279497132.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 19953     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 694154..705668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS33_RS03400 - 695891..696835 (-) 945 WP_216949830.1 branched-chain amino acid transaminase -
  QBS33_RS03405 ilvM 696848..697126 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  QBS33_RS03410 ilvG 697123..698769 (-) 1647 WP_279497131.1 acetolactate synthase 2 catalytic subunit -
  QBS33_RS03415 comM 699154..700668 (+) 1515 WP_279497132.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QBS33_RS03420 - 700795..701694 (+) 900 WP_279497133.1 acyltransferase -
  QBS33_RS03425 - 701701..702666 (+) 966 WP_279497134.1 acyltransferase -
  QBS33_RS03430 - 702591..703097 (-) 507 WP_279497135.1 DUF523 domain-containing protein -
  QBS33_RS03435 - 703094..703744 (-) 651 WP_005339607.1 DNA mismatch repair protein MutT -
  QBS33_RS03440 - 703819..704454 (+) 636 WP_005357452.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54590.54 Da        Isoelectric Point: 7.6884

>NTDB_id=814386 QBS33_RS03415 WP_279497132.1 699154..700668(+) (comM) [Aeromonas veronii strain ANYA 19953]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQNAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRARVLVARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=814386 QBS33_RS03415 WP_279497132.1 699154..700668(+) (comM) [Aeromonas veronii strain ANYA 19953]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACGGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAAGAGTCTCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAACTTCGAGTTCCCGAGCAAACACATCACAGTCAATCTGGCCCCCGCCGACCTGCCCAAGGAGGGAGGCCGT
TTCGATCTGGCAATCGCCATCGGTATTCTTGCCGCTTCCAAGCAGATACCTGCAAAATATCTGCTCGATCACGAATTTTT
AGGGGAATTGGCCCTGACCGGAGAGATCCGCCCTGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGCGATGCGGGAC
GCACCCTGCTGGTGCCGCGAGAGAACGGCCCCGAAGCGTCCCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAATACGAGCTGCCGCTGCCGGATCCCCAAAACGCGGAGAGCCTGCCCGATGT
ACCAGATCTGCAGGATGTTATTGGTCAGTCTCAGGCCAAGCGGGCGTTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCAAGCCGCTTGCCCGGCATCTTGCCACCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGTGGCCTCACCCCACGCGCCGGTCACTGGCACCACAGGCCATACCG
CACGCCGCACCACAGTGCCTCGGCAGTGGCGCTGGTGGGAGGCGGCAGCCACCCGCGGCCCGGCGAAATTTCGCTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAATTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAATCCCAG
CCCTTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTATCTCGGCAAACTCTCCGGCC
CCTTTCTCGACCGCTTCGATCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCTAGTCAGCAGATCCGCGCTCGGGTGCTGGTGGCGCGAGAGCGTATGCTGAGCCGTAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCACCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGCTACCGGGCCATGGACAGGCTGCTGTCGCGACTGCGCAGCAGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

61.144

100

0.615
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464