Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QBS05_RS03560 Genome accession   NZ_CP121795
Coordinates   708689..710203 (+) Length   504 a.a.
NCBI ID   WP_279462651.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain DAMIAN 12594     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 703689..715203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS05_RS03545 - 705438..706382 (-) 945 WP_010635712.1 branched-chain amino acid transaminase -
  QBS05_RS03550 ilvM 706395..706646 (-) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  QBS05_RS03555 ilvG 706643..708304 (-) 1662 WP_279462648.1 acetolactate synthase 2 catalytic subunit -
  QBS05_RS03560 comM 708689..710203 (+) 1515 WP_279462651.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QBS05_RS03565 - 710319..711233 (+) 915 WP_017787026.1 acyltransferase -
  QBS05_RS03570 - 711227..712180 (+) 954 WP_042005577.1 acyltransferase -
  QBS05_RS03575 - 712126..712611 (-) 486 WP_017764912.1 DUF523 domain-containing protein -
  QBS05_RS03580 - 712712..713362 (-) 651 WP_005306829.1 DNA mismatch repair protein MutT -
  QBS05_RS03585 - 713438..714073 (+) 636 WP_005306831.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54658.58 Da        Isoelectric Point: 7.1343

>NTDB_id=814252 QBS05_RS03560 WP_279462651.1 708689..710203(+) (comM) [Aeromonas dhakensis strain DAMIAN 12594]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPWENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSAENLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSGQIRERVLGARERMLSRNGKLNNLLDSREIEEICRLLPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGHAAI
EREHLIEAIGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=814252 QBS05_RS03560 WP_279462651.1 708689..710203(+) (comM) [Aeromonas dhakensis strain DAMIAN 12594]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGAATAGCGGCCCCGCAAGTCACGGTGGAAGTGCACCTCTCCAA
CGGTCTGCCCGCCTTCAATATGGTGGGACTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATAGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAGCACATCACGGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCCGCAAAATACCTGCTTGATCACGAATTTTT
AGGCGAGCTAGCCCTGACCGGCGAGATCCGCCCCGTGCTCGGCGTGCTGCCCGCCGTGCTCGCCTGCCGCGATGCCGGGC
GCACCCTGCTGGTCCCGTGGGAGAACGGCCCCGAGGCCTCGCTGATCCAGGACGCCGAGGTACGCACCGCCCATCAGCTG
CTGGCCGTCACCGCCTGGCTGGCGGGTCAATACGAGCTGCCGCTGCCGGATCCCCAGAGCGCGGAGAACCTGCCAGACGT
GCCGGATCTGCAGGATGTGATCGGCCAATCCCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGTACCGGCAAGAGCATGCTGGCGAGCCGTCTGCCCGGCATCTTGCCACCGCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCTCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCGCACCACAGCGCCTCGGCCGTGGCGCTGGTGGGCGGTGGCAGCCACCCGCGGCCCGGTGAAATATCCCTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAAACG
GGCCACATCACCATCAGCCGGGCCGCCCGCCAGGTCGATTTCCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCATGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACTTGACGGTGGAAGTACCGCTGCTGCCCAAGGGCAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCGGTCAGATCCGCGAACGGGTGCTGGGCGCGCGGGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAACCT
GCTTGATAGCCGCGAAATCGAAGAAATTTGCCGCTTATTGCCGCAGGATGCCGAGTTTCTAGAGAACGCCATCCAGAAAC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCGGGGCATGCCGCCATC
GAAAGAGAGCACCTGATCGAGGCGATCGGCTATCGGGCCATGGATCGGCTGCTGTCACGGCTGCGCAGCGGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.745

99.603

0.635
  comM Vibrio campbellii strain DS40M4

62.351

99.603

0.621
  comM Haemophilus influenzae Rd KW20

61.858

100

0.621
  comM Glaesserella parasuis strain SC1401

61.144

100

0.615
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466