Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QBS29_RS06075 Genome accession   NZ_CP121794
Coordinates   670119..671636 (+) Length   505 a.a.
NCBI ID   WP_279474123.1    Uniprot ID   -
Organism   Aeromonas caviae strain FIONA 16800     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 665119..676636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS29_RS06060 - 666877..667821 (-) 945 WP_039039680.1 branched-chain amino acid transaminase -
  QBS29_RS06065 ilvM 667834..668091 (-) 258 WP_010676086.1 acetolactate synthase 2 small subunit -
  QBS29_RS06070 ilvG 668088..669734 (-) 1647 WP_279474122.1 acetolactate synthase 2 catalytic subunit -
  QBS29_RS06075 comM 670119..671636 (+) 1518 WP_279474123.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QBS29_RS06080 - 671769..672668 (+) 900 WP_043153400.1 acyltransferase -
  QBS29_RS06085 - 672676..673632 (+) 957 WP_279474124.1 acyltransferase -
  QBS29_RS06090 - 673578..674063 (-) 486 WP_279474125.1 DUF523 domain-containing protein -
  QBS29_RS06095 - 674140..674790 (-) 651 WP_029314880.1 DNA mismatch repair protein MutT -
  QBS29_RS06100 - 674865..675500 (+) 636 WP_279474126.1 nicotinamidase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54720.60 Da        Isoelectric Point: 7.4701

>NTDB_id=814217 QBS29_RS06075 WP_279474123.1 670119..671636(+) (comM) [Aeromonas caviae strain FIONA 16800]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPSVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQSAETLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSTSAVALVGGGTHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPRGSLTGKAERG
ESSQQIRERVLGARERMLSRSGKLNNLLDSREIEDVCRLSPQDAEFLEGAIQKLGLSIRAWHRILRVSRTIADLAGHATI
ERAHLIEALGYRAMDRLLSRLRGGQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=814217 QBS29_RS06075 WP_279474123.1 670119..671636(+) (comM) [Aeromonas caviae strain FIONA 16800]
ATGTCATTAGCTGTTGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTAGAGGTGCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTGGGGTTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACCGTCAACCTGGCCCCTGCAGATCTGCCCAAAGAGGGGGGCCGC
TTCGACCTGGCCATCGCCATCGGCATTCTCGCCGCATCCAAGCAAATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAATTGGCCCTGACGGGCGAGATCCGCCCCGTGCTTGGGGTGCTCCCCTCGGTGCTCGCCTGCCGCGACGCAGGGC
GCACCCTGCTGGTCCCACGGGAGAACGGTCCGGAGGCTTCCCTCATACAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCGGTCACCGCCTGGCTGGCGGGCCAGTACGAACTGCCGCTGCCGGAACCCCAGAGCGCGGAGACCCTGCCCGACGT
GCCGGATCTGCAGGATGTGATCGGTCAGTCCCAGGCGAAGCGGGCGCTGGAGATCGCCGCAGCTGGCAGCCACAACCTGC
TGTTCATCGGCCCCCCCGGTACCGGCAAGAGCATGCTGGCCAGCCGTCTGCCCGGCATTCTGCCACCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCAGCCATCCACTCCATCGGCGGCCTCACCCCCCGCGCCGGCCACTGGCACCACAGGCCGTATCG
CACGCCCCATCACAGCACCTCGGCAGTGGCGCTGGTGGGCGGGGGTACCCATCCCAGGCCTGGCGAAATTTCCCTCGCCC
ACAACGGGGTACTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACC
GGGCACATCACCATCAGTCGTGCCGCCCGCCAGGTGGATTTTCCCGCCCGCTTCCAACTGGTGGGTGCCATGAATCCCAG
CCCCTGCGGCCATTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTATCTGGGCAAGCTCTCCGGCC
CCTTTCTCGATCGGTTCGATCTGACGGTAGAGGTCCCGCTCTTGCCCAGGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAATCGAGCCAGCAGATACGCGAACGGGTGCTGGGGGCGCGAGAGCGCATGCTGAGTCGCAGCGGAAAACTCAACAACCT
GCTGGATAGTCGTGAAATCGAAGATGTTTGCAGATTATCGCCACAGGATGCCGAGTTTCTGGAGGGTGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGAGTATCGCGCACCATCGCCGATCTGGCGGGACACGCCACCATC
GAGAGAGCCCATCTGATCGAAGCCCTGGGCTATCGTGCCATGGACAGGCTGTTGTCACGGCTGCGCGGGGGCCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.745

99.406

0.634
  comM Vibrio campbellii strain DS40M4

61.952

99.406

0.616
  comM Haemophilus influenzae Rd KW20

61.462

100

0.616
  comM Glaesserella parasuis strain SC1401

60.433

100

0.608
  comM Legionella pneumophila str. Paris

50.794

99.802

0.507
  comM Legionella pneumophila strain ERS1305867

50.794

99.802

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.972

100

0.463