Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QBD88_RS22700 Genome accession   NZ_CP121772
Coordinates   4702288..4702818 (-) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain E1-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4697288..4707818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD88_RS22670 (QBD88_22650) - 4697830..4698273 (-) 444 WP_015379208.1 lipocalin-like domain-containing protein -
  QBD88_RS22675 (QBD88_22655) - 4698469..4698729 (+) 261 WP_004936809.1 YdgH/BhsA/McbA-like domain containing protein -
  QBD88_RS22680 (QBD88_22660) - 4698785..4699702 (-) 918 WP_075684486.1 LysR family transcriptional regulator -
  QBD88_RS22685 (QBD88_22665) - 4699830..4700579 (+) 750 WP_380692251.1 3-oxoacyl-ACP reductase family protein -
  QBD88_RS22690 (QBD88_22670) - 4700814..4701026 (+) 213 WP_004936800.1 DUF1471 domain-containing protein -
  QBD88_RS22695 (QBD88_22675) - 4701246..4702202 (+) 957 WP_049189118.1 cyclase family protein -
  QBD88_RS22700 (QBD88_22680) ssb 4702288..4702818 (-) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QBD88_RS22705 (QBD88_22685) uvrA 4703096..4705924 (+) 2829 WP_015379213.1 excinuclease ABC subunit UvrA -
  QBD88_RS22710 (QBD88_22690) - 4706154..4707206 (+) 1053 WP_004936787.1 NAD(P)-dependent alcohol dehydrogenase -
  QBD88_RS22715 (QBD88_22695) maa 4707238..4707795 (-) 558 WP_053091215.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=814144 QBD88_RS22700 WP_004936793.1 4702288..4702818(-) (ssb) [Serratia marcescens strain E1-2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=814144 QBD88_RS22700 WP_004936793.1 4702288..4702818(-) (ssb) [Serratia marcescens strain E1-2]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGTGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGTGGCCAGGGCGGTTGGG
GTCAACCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCACCG
GCGACCAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364