Detailed information    

insolico Bioinformatically predicted

Overview


Name   comE   Type   Machinery gene
Locus tag   QBL01_RS09705 Genome accession   NZ_CP121769
Coordinates   1953456..1954718 (-) Length   420 a.a.
NCBI ID   WP_279378415.1    Uniprot ID   A0AAJ6AHL5
Organism   Glaesserella parasuis strain Z44     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1948456..1959718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL01_RS09670 (QBL01_09670) - 1948865..1949284 (+) 420 WP_021112075.1 hotdog fold thioesterase -
  QBL01_RS09675 (QBL01_09675) - 1949437..1949787 (-) 351 WP_043894779.1 hypothetical protein -
  QBL01_RS09680 (QBL01_09680) trxA 1950272..1950586 (-) 315 WP_015940165.1 thioredoxin -
  QBL01_RS09685 (QBL01_09685) - 1950883..1951512 (-) 630 WP_015940164.1 LysE family transporter -
  QBL01_RS09690 (QBL01_09690) - 1951514..1951984 (-) 471 WP_160576538.1 phosphatidylglycerophosphatase A -
  QBL01_RS09695 (QBL01_09695) thiL 1951987..1952955 (-) 969 WP_261481910.1 thiamine-phosphate kinase -
  QBL01_RS09700 (QBL01_09700) nusB 1952964..1953377 (-) 414 WP_021112072.1 transcription antitermination factor NusB -
  QBL01_RS09705 (QBL01_09705) comE 1953456..1954718 (-) 1263 WP_279378415.1 type IV pilus secretin PilQ Machinery gene
  QBL01_RS09710 (QBL01_09710) comD 1954728..1955114 (-) 387 WP_021112070.1 hypothetical protein Machinery gene
  QBL01_RS09715 (QBL01_09715) comC 1955114..1955644 (-) 531 WP_043894777.1 hypothetical protein Machinery gene
  QBL01_RS09720 (QBL01_09720) comB 1955641..1956162 (-) 522 WP_021112068.1 hypothetical protein Machinery gene
  QBL01_RS09725 (QBL01_09725) comA 1956138..1956815 (-) 678 WP_021112067.1 hypothetical protein Machinery gene
  QBL01_RS09730 (QBL01_09730) - 1956969..1959536 (+) 2568 WP_075630383.1 penicillin-binding protein 1A -

Sequence


Protein


Download         Length: 420 a.a.        Molecular weight: 46967.82 Da        Isoelectric Point: 7.3676

>NTDB_id=814120 QBL01_RS09705 WP_279378415.1 1953456..1954718(-) (comE) [Glaesserella parasuis strain Z44]
MRYLFLIFFATFPVLANQQISLSIRNAPTAEIISYLAEETGKNITISDEIKDTKNFRVEKSHFDEILNSLIKTHQLNLKK
ENGIYYIHQAQEHKQHTTAQLVNALPKLITKTIKLHYSKASEVIESLTKGQGNLLSESGYLHFDDRSNSIIVKDSAASVK
NFTQLIESLDKPTEQIAIEARIVTISSEHLQQLGVRWGLFSPNENHYKLAGNLEGNGLTTNNLNVNFPVNPSASVALQIA
AINSRVLDLELTALESENNIEIIASPRLLTTDKKPASIKQGTEIPYAMYSKKEEITDIEFREAVLGLEVTPHISKQNQIL
LDLAISQNSPNNQINNTMVTIDKQEIKTQVLAKHGETIVLGGIFQHLIAKGEDKVPLLGSIPVIKRLFSQSQDKISKREL
VIFVTPYIVKSEKIGAEKQK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=814120 QBL01_RS09705 WP_279378415.1 1953456..1954718(-) (comE) [Glaesserella parasuis strain Z44]
ATGCGTTATTTATTTCTGATCTTCTTTGCTACTTTTCCTGTATTAGCAAACCAACAAATTTCACTTTCGATAAGAAATGC
CCCAACGGCAGAGATTATTAGTTATTTGGCGGAGGAAACGGGAAAGAATATTACAATTTCGGATGAAATTAAAGATACAA
AAAATTTCAGAGTAGAAAAAAGCCATTTTGATGAGATATTAAATAGTTTAATCAAAACACATCAATTAAATTTAAAAAAA
GAAAATGGCATTTACTATATTCATCAAGCCCAAGAACATAAACAACATACTACGGCACAATTAGTTAATGCTCTGCCTAA
ATTAATCACCAAAACAATCAAGTTACACTATTCCAAAGCCTCTGAAGTTATAGAGTCTTTAACAAAAGGGCAAGGCAATT
TACTATCAGAAAGTGGTTATCTTCACTTTGATGATCGCAGTAATAGCATTATCGTCAAAGACAGTGCCGCCTCAGTTAAA
AACTTTACTCAACTTATCGAAAGCCTAGATAAACCAACGGAACAAATTGCAATTGAAGCCCGAATTGTCACTATCAGCAG
TGAACATTTACAACAACTTGGCGTGCGTTGGGGCTTATTTTCCCCTAACGAAAATCACTACAAATTGGCAGGCAATTTAG
AAGGCAACGGATTAACTACCAACAACTTAAACGTAAATTTTCCAGTAAATCCGTCCGCTTCTGTTGCCTTACAAATTGCT
GCAATCAACAGCCGTGTACTTGATTTAGAACTTACTGCATTAGAAAGCGAAAATAACATAGAGATCATTGCAAGCCCTCG
CTTACTCACAACAGATAAAAAACCAGCGAGTATCAAACAAGGTACAGAAATTCCTTATGCAATGTACAGTAAGAAAGAGG
AAATCACCGATATTGAATTTCGTGAAGCCGTTTTGGGGTTAGAGGTCACGCCACATATTTCTAAACAAAATCAGATTTTG
TTAGACCTCGCTATCAGCCAAAATTCGCCCAATAACCAAATAAATAATACAATGGTGACAATTGATAAACAGGAAATCAA
AACGCAAGTTCTAGCTAAACACGGTGAAACCATCGTATTAGGCGGTATTTTTCAACATCTGATCGCCAAAGGCGAAGATA
AAGTACCGCTGTTAGGCAGTATCCCCGTGATTAAACGCTTATTTAGCCAAAGCCAAGATAAAATCTCTAAACGAGAATTA
GTGATTTTTGTCACGCCTTATATTGTGAAATCTGAAAAAATAGGAGCGGAAAAGCAGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Glaesserella parasuis strain SC1401

99.524

100

0.995

  comE Haemophilus influenzae Rd KW20

53.176

100

0.538

  comE Haemophilus influenzae 86-028NP

52.235

100

0.529

  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

38.164

98.571

0.376

  pilQ Vibrio cholerae strain A1552

38.164

98.571

0.376

  pilQ Vibrio campbellii strain DS40M4

36.967

100

0.371