Detailed information
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | QBL01_RS09705 | Genome accession | NZ_CP121769 |
| Coordinates | 1953456..1954718 (-) | Length | 420 a.a. |
| NCBI ID | WP_279378415.1 | Uniprot ID | A0AAJ6AHL5 |
| Organism | Glaesserella parasuis strain Z44 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1948456..1959718
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QBL01_RS09670 (QBL01_09670) | - | 1948865..1949284 (+) | 420 | WP_021112075.1 | hotdog fold thioesterase | - |
| QBL01_RS09675 (QBL01_09675) | - | 1949437..1949787 (-) | 351 | WP_043894779.1 | hypothetical protein | - |
| QBL01_RS09680 (QBL01_09680) | trxA | 1950272..1950586 (-) | 315 | WP_015940165.1 | thioredoxin | - |
| QBL01_RS09685 (QBL01_09685) | - | 1950883..1951512 (-) | 630 | WP_015940164.1 | LysE family transporter | - |
| QBL01_RS09690 (QBL01_09690) | - | 1951514..1951984 (-) | 471 | WP_160576538.1 | phosphatidylglycerophosphatase A | - |
| QBL01_RS09695 (QBL01_09695) | thiL | 1951987..1952955 (-) | 969 | WP_261481910.1 | thiamine-phosphate kinase | - |
| QBL01_RS09700 (QBL01_09700) | nusB | 1952964..1953377 (-) | 414 | WP_021112072.1 | transcription antitermination factor NusB | - |
| QBL01_RS09705 (QBL01_09705) | comE | 1953456..1954718 (-) | 1263 | WP_279378415.1 | type IV pilus secretin PilQ | Machinery gene |
| QBL01_RS09710 (QBL01_09710) | comD | 1954728..1955114 (-) | 387 | WP_021112070.1 | hypothetical protein | Machinery gene |
| QBL01_RS09715 (QBL01_09715) | comC | 1955114..1955644 (-) | 531 | WP_043894777.1 | hypothetical protein | Machinery gene |
| QBL01_RS09720 (QBL01_09720) | comB | 1955641..1956162 (-) | 522 | WP_021112068.1 | hypothetical protein | Machinery gene |
| QBL01_RS09725 (QBL01_09725) | comA | 1956138..1956815 (-) | 678 | WP_021112067.1 | hypothetical protein | Machinery gene |
| QBL01_RS09730 (QBL01_09730) | - | 1956969..1959536 (+) | 2568 | WP_075630383.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 420 a.a. Molecular weight: 46967.82 Da Isoelectric Point: 7.3676
>NTDB_id=814120 QBL01_RS09705 WP_279378415.1 1953456..1954718(-) (comE) [Glaesserella parasuis strain Z44]
MRYLFLIFFATFPVLANQQISLSIRNAPTAEIISYLAEETGKNITISDEIKDTKNFRVEKSHFDEILNSLIKTHQLNLKK
ENGIYYIHQAQEHKQHTTAQLVNALPKLITKTIKLHYSKASEVIESLTKGQGNLLSESGYLHFDDRSNSIIVKDSAASVK
NFTQLIESLDKPTEQIAIEARIVTISSEHLQQLGVRWGLFSPNENHYKLAGNLEGNGLTTNNLNVNFPVNPSASVALQIA
AINSRVLDLELTALESENNIEIIASPRLLTTDKKPASIKQGTEIPYAMYSKKEEITDIEFREAVLGLEVTPHISKQNQIL
LDLAISQNSPNNQINNTMVTIDKQEIKTQVLAKHGETIVLGGIFQHLIAKGEDKVPLLGSIPVIKRLFSQSQDKISKREL
VIFVTPYIVKSEKIGAEKQK
MRYLFLIFFATFPVLANQQISLSIRNAPTAEIISYLAEETGKNITISDEIKDTKNFRVEKSHFDEILNSLIKTHQLNLKK
ENGIYYIHQAQEHKQHTTAQLVNALPKLITKTIKLHYSKASEVIESLTKGQGNLLSESGYLHFDDRSNSIIVKDSAASVK
NFTQLIESLDKPTEQIAIEARIVTISSEHLQQLGVRWGLFSPNENHYKLAGNLEGNGLTTNNLNVNFPVNPSASVALQIA
AINSRVLDLELTALESENNIEIIASPRLLTTDKKPASIKQGTEIPYAMYSKKEEITDIEFREAVLGLEVTPHISKQNQIL
LDLAISQNSPNNQINNTMVTIDKQEIKTQVLAKHGETIVLGGIFQHLIAKGEDKVPLLGSIPVIKRLFSQSQDKISKREL
VIFVTPYIVKSEKIGAEKQK
Nucleotide
Download Length: 1263 bp
>NTDB_id=814120 QBL01_RS09705 WP_279378415.1 1953456..1954718(-) (comE) [Glaesserella parasuis strain Z44]
ATGCGTTATTTATTTCTGATCTTCTTTGCTACTTTTCCTGTATTAGCAAACCAACAAATTTCACTTTCGATAAGAAATGC
CCCAACGGCAGAGATTATTAGTTATTTGGCGGAGGAAACGGGAAAGAATATTACAATTTCGGATGAAATTAAAGATACAA
AAAATTTCAGAGTAGAAAAAAGCCATTTTGATGAGATATTAAATAGTTTAATCAAAACACATCAATTAAATTTAAAAAAA
GAAAATGGCATTTACTATATTCATCAAGCCCAAGAACATAAACAACATACTACGGCACAATTAGTTAATGCTCTGCCTAA
ATTAATCACCAAAACAATCAAGTTACACTATTCCAAAGCCTCTGAAGTTATAGAGTCTTTAACAAAAGGGCAAGGCAATT
TACTATCAGAAAGTGGTTATCTTCACTTTGATGATCGCAGTAATAGCATTATCGTCAAAGACAGTGCCGCCTCAGTTAAA
AACTTTACTCAACTTATCGAAAGCCTAGATAAACCAACGGAACAAATTGCAATTGAAGCCCGAATTGTCACTATCAGCAG
TGAACATTTACAACAACTTGGCGTGCGTTGGGGCTTATTTTCCCCTAACGAAAATCACTACAAATTGGCAGGCAATTTAG
AAGGCAACGGATTAACTACCAACAACTTAAACGTAAATTTTCCAGTAAATCCGTCCGCTTCTGTTGCCTTACAAATTGCT
GCAATCAACAGCCGTGTACTTGATTTAGAACTTACTGCATTAGAAAGCGAAAATAACATAGAGATCATTGCAAGCCCTCG
CTTACTCACAACAGATAAAAAACCAGCGAGTATCAAACAAGGTACAGAAATTCCTTATGCAATGTACAGTAAGAAAGAGG
AAATCACCGATATTGAATTTCGTGAAGCCGTTTTGGGGTTAGAGGTCACGCCACATATTTCTAAACAAAATCAGATTTTG
TTAGACCTCGCTATCAGCCAAAATTCGCCCAATAACCAAATAAATAATACAATGGTGACAATTGATAAACAGGAAATCAA
AACGCAAGTTCTAGCTAAACACGGTGAAACCATCGTATTAGGCGGTATTTTTCAACATCTGATCGCCAAAGGCGAAGATA
AAGTACCGCTGTTAGGCAGTATCCCCGTGATTAAACGCTTATTTAGCCAAAGCCAAGATAAAATCTCTAAACGAGAATTA
GTGATTTTTGTCACGCCTTATATTGTGAAATCTGAAAAAATAGGAGCGGAAAAGCAGAAATAA
ATGCGTTATTTATTTCTGATCTTCTTTGCTACTTTTCCTGTATTAGCAAACCAACAAATTTCACTTTCGATAAGAAATGC
CCCAACGGCAGAGATTATTAGTTATTTGGCGGAGGAAACGGGAAAGAATATTACAATTTCGGATGAAATTAAAGATACAA
AAAATTTCAGAGTAGAAAAAAGCCATTTTGATGAGATATTAAATAGTTTAATCAAAACACATCAATTAAATTTAAAAAAA
GAAAATGGCATTTACTATATTCATCAAGCCCAAGAACATAAACAACATACTACGGCACAATTAGTTAATGCTCTGCCTAA
ATTAATCACCAAAACAATCAAGTTACACTATTCCAAAGCCTCTGAAGTTATAGAGTCTTTAACAAAAGGGCAAGGCAATT
TACTATCAGAAAGTGGTTATCTTCACTTTGATGATCGCAGTAATAGCATTATCGTCAAAGACAGTGCCGCCTCAGTTAAA
AACTTTACTCAACTTATCGAAAGCCTAGATAAACCAACGGAACAAATTGCAATTGAAGCCCGAATTGTCACTATCAGCAG
TGAACATTTACAACAACTTGGCGTGCGTTGGGGCTTATTTTCCCCTAACGAAAATCACTACAAATTGGCAGGCAATTTAG
AAGGCAACGGATTAACTACCAACAACTTAAACGTAAATTTTCCAGTAAATCCGTCCGCTTCTGTTGCCTTACAAATTGCT
GCAATCAACAGCCGTGTACTTGATTTAGAACTTACTGCATTAGAAAGCGAAAATAACATAGAGATCATTGCAAGCCCTCG
CTTACTCACAACAGATAAAAAACCAGCGAGTATCAAACAAGGTACAGAAATTCCTTATGCAATGTACAGTAAGAAAGAGG
AAATCACCGATATTGAATTTCGTGAAGCCGTTTTGGGGTTAGAGGTCACGCCACATATTTCTAAACAAAATCAGATTTTG
TTAGACCTCGCTATCAGCCAAAATTCGCCCAATAACCAAATAAATAATACAATGGTGACAATTGATAAACAGGAAATCAA
AACGCAAGTTCTAGCTAAACACGGTGAAACCATCGTATTAGGCGGTATTTTTCAACATCTGATCGCCAAAGGCGAAGATA
AAGTACCGCTGTTAGGCAGTATCCCCGTGATTAAACGCTTATTTAGCCAAAGCCAAGATAAAATCTCTAAACGAGAATTA
GTGATTTTTGTCACGCCTTATATTGTGAAATCTGAAAAAATAGGAGCGGAAAAGCAGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Glaesserella parasuis strain SC1401 |
99.524 |
100 |
0.995 |
| comE | Haemophilus influenzae Rd KW20 |
53.176 |
100 |
0.538 |
| comE | Haemophilus influenzae 86-028NP |
52.235 |
100 |
0.529 |
| pilQ | Vibrio cholerae O1 biovar El Tor strain E7946 |
38.164 |
98.571 |
0.376 |
| pilQ | Vibrio cholerae strain A1552 |
38.164 |
98.571 |
0.376 |
| pilQ | Vibrio campbellii strain DS40M4 |
36.967 |
100 |
0.371 |