Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QBL01_RS09715 Genome accession   NZ_CP121769
Coordinates   1955114..1955644 (-) Length   176 a.a.
NCBI ID   WP_043894777.1    Uniprot ID   -
Organism   Glaesserella parasuis strain Z44     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1950114..1960644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL01_RS09680 (QBL01_09680) trxA 1950272..1950586 (-) 315 WP_015940165.1 thioredoxin -
  QBL01_RS09685 (QBL01_09685) - 1950883..1951512 (-) 630 WP_015940164.1 LysE family transporter -
  QBL01_RS09690 (QBL01_09690) - 1951514..1951984 (-) 471 WP_160576538.1 phosphatidylglycerophosphatase A -
  QBL01_RS09695 (QBL01_09695) thiL 1951987..1952955 (-) 969 WP_261481910.1 thiamine-phosphate kinase -
  QBL01_RS09700 (QBL01_09700) nusB 1952964..1953377 (-) 414 WP_021112072.1 transcription antitermination factor NusB -
  QBL01_RS09705 (QBL01_09705) comE 1953456..1954718 (-) 1263 WP_279378415.1 type IV pilus secretin PilQ Machinery gene
  QBL01_RS09710 (QBL01_09710) comD 1954728..1955114 (-) 387 WP_021112070.1 hypothetical protein Machinery gene
  QBL01_RS09715 (QBL01_09715) comC 1955114..1955644 (-) 531 WP_043894777.1 hypothetical protein Machinery gene
  QBL01_RS09720 (QBL01_09720) comB 1955641..1956162 (-) 522 WP_021112068.1 hypothetical protein Machinery gene
  QBL01_RS09725 (QBL01_09725) comA 1956138..1956815 (-) 678 WP_021112067.1 hypothetical protein Machinery gene
  QBL01_RS09730 (QBL01_09730) - 1956969..1959536 (+) 2568 WP_075630383.1 penicillin-binding protein 1A -
  QBL01_RS09735 (QBL01_09735) aroK 1959766..1960287 (+) 522 WP_015940157.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 20878.37 Da        Isoelectric Point: 9.9672

>NTDB_id=814122 QBL01_RS09715 WP_043894777.1 1955114..1955644(-) (comC) [Glaesserella parasuis strain Z44]
MKLSLAKYYLMPQHPLYRGLYYLNQNKIFILSGIFLLIMVFPIGNYLYLNQQIAQQQKQLTEFKQINEHKQQQLKLLQQR
YQLAQDKSELLTQINQQIQKILDKNSVEIDSIQWNMEERKIYLLISQSTQKVLNVIADLNQLTTVKFQEIHLTKKTKQKH
IQLNATLLFQADTGEP

Nucleotide


Download         Length: 531 bp        

>NTDB_id=814122 QBL01_RS09715 WP_043894777.1 1955114..1955644(-) (comC) [Glaesserella parasuis strain Z44]
ATGAAATTGTCCTTAGCCAAGTATTATTTAATGCCACAACATCCATTATATCGTGGTTTATATTATTTAAACCAAAATAA
AATATTTATTCTATCGGGAATATTTTTGTTAATTATGGTATTTCCAATAGGGAATTATCTTTATCTTAATCAGCAAATAG
CTCAACAACAAAAACAGCTCACTGAATTTAAACAGATTAACGAACATAAACAGCAACAATTAAAATTATTACAACAACGT
TATCAACTTGCTCAAGATAAAAGTGAATTATTAACCCAAATAAATCAACAAATTCAAAAAATCTTGGATAAAAACAGCGT
AGAAATTGACAGTATTCAATGGAATATGGAAGAAAGAAAAATCTATTTATTAATCAGCCAATCTACGCAAAAGGTACTTA
ATGTGATTGCTGATCTTAATCAATTAACCACGGTTAAATTTCAGGAAATCCATTTAACTAAAAAAACAAAACAGAAACAT
ATTCAACTCAATGCCACTTTACTTTTTCAAGCTGACACAGGAGAACCCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Glaesserella parasuis strain SC1401

99.432

100

0.994