Detailed information NTG0814110

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: QBL01_RS04150
• Genome accession: NZ_CP121769
• Coordinates: 793489..794685 (+)
• Length: 398 a.a.
• NCBI ID: WP_279378643.1
• Uniprot ID: A0AAJ6DB93
• Organism: Glaesserella parasuis strain Z44
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 788489..799685

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QBL01_RS04130 (QBL01_04130)	radA	788959..790335 (-)	1377	WP_261482606.1	DNA repair protein RadA	-
QBL01_RS04135 (QBL01_04135)	pilA	790523..790969 (+)	447	WP_160442335.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
QBL01_RS04140 (QBL01_04140)	-	791310..791675 (+)	366	WP_160433175.1	DUF559 domain-containing protein	-
QBL01_RS04145 (QBL01_04145)	pilB	792111..793496 (+)	1386	WP_279378642.1	GspE/PulE family protein	Machinery gene
QBL01_RS04150 (QBL01_04150)	pilC	793489..794685 (+)	1197	WP_279378643.1	type II secretion system F family protein	Machinery gene
QBL01_RS04155 (QBL01_04155)	-	794682..795350 (+)	669	WP_021117769.1	prepilin peptidase	-
QBL01_RS04160 (QBL01_04160)	dapE	795434..796567 (+)	1134	WP_021117768.1	succinyl-diaminopimelate desuccinylase	-
QBL01_RS04165 (QBL01_04165)	clpX	796641..797891 (-)	1251	WP_042906659.1	ATP-dependent protease ATP-binding subunit ClpX	-
QBL01_RS04170 (QBL01_04170)	clpP	797898..798479 (-)	582	WP_010787003.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	-
QBL01_RS04175 (QBL01_04175)	-	798580..798969 (+)	390	WP_075606473.1	SufE family protein	-

Sequence

Protein

• Length: 398 a.a.
• Molecular weight: 45744.56 Da
• Isoelectric Point: 10.1228

>NTDB_id=814110 QBL01_RS04150 WP_279378643.1 793489..794685(+) (pilC) [Glaesserella parasuis strain Z44]
MNNIYEFQWKGRNRFGQKQTGRQLAESREVLEKRLQQKGYSQLRISRHFALPTAPKKEEINQFMQQLALLIQAKIPLKQS
LVMLLETCQNRTFYRWQQETIRLIEAGFALSVAFEKQGKYINPQEIQLIKMAETSGNLGLILTNIAQRREKSEKLTKKIK
KILFYPVFILAISITLSILLLLFIVPQFAELYGSKGKSLPLITEILFSLSHFLQHSILTLIILCVLCFLLIHILNKKTDL
IKRLKFIILSHIPILKGIIQYSRIIFFCQNSSLMLASHIRLDTVLHSFLANKSDDILLQRSLATTLTYLKQGYRLADSLD
PKLFPTDMLQMIAIGEQSGKLSPMLQQISDGYQQRLDYQIDILSQLLEPMLMVLMGIIVGAILVGLYLPIFDMGAMIE

Nucleotide

• Length: 1197 bp

>NTDB_id=814110 QBL01_RS04150 WP_279378643.1 793489..794685(+) (pilC) [Glaesserella parasuis strain Z44]
ATGAATAACATTTATGAATTTCAATGGAAAGGACGCAACCGCTTTGGACAAAAGCAAACAGGGCGACAGCTTGCCGAAAG
CAGAGAAGTGCTAGAAAAACGCTTGCAACAAAAAGGCTATAGCCAGTTACGCATTAGCCGACATTTTGCCTTGCCGACGG
CACCGAAAAAGGAAGAAATTAATCAATTTATGCAACAGTTGGCATTATTAATTCAAGCCAAAATCCCCCTAAAACAGAGT
TTGGTAATGTTGCTGGAAACTTGCCAAAATCGCACCTTTTACCGTTGGCAACAAGAGACAATCCGCTTGATTGAAGCTGG
CTTTGCCCTATCCGTTGCCTTTGAAAAACAGGGGAAATATATCAATCCACAAGAGATCCAATTAATTAAAATGGCAGAAA
CAAGCGGTAATTTAGGGCTGATTTTAACCAATATTGCACAACGCCGTGAAAAATCGGAAAAACTAACCAAGAAAATTAAA
AAAATTCTCTTTTATCCCGTCTTTATTTTAGCTATTTCAATCACACTCTCTATTTTATTATTACTTTTTATTGTGCCACA
ATTTGCAGAACTTTATGGATCAAAAGGAAAATCATTACCCCTAATTACCGAAATACTCTTTAGCCTATCTCATTTTCTAC
AACACTCTATTTTAACGCTAATTATTTTATGTGTGTTATGTTTTCTATTAATTCATATTTTAAATAAAAAAACAGATCTT
ATTAAACGCCTAAAGTTTATTATATTAAGCCATATTCCTATTTTAAAAGGCATTATCCAGTATTCACGCATTATCTTTTT
TTGTCAAAATAGCAGTTTAATGCTGGCTTCACATATTCGTTTAGATACTGTACTTCATTCCTTTTTAGCCAATAAAAGTG
ATGATATTTTATTACAACGTTCTCTAGCAACTACACTAACTTATTTAAAACAAGGTTATCGTTTAGCCGACAGTTTAGAT
CCAAAACTCTTTCCTACGGATATGTTACAGATGATTGCCATTGGCGAGCAGAGCGGAAAATTATCGCCAATGTTGCAACA
AATCAGCGACGGTTATCAACAGCGGTTAGATTATCAAATTGATATACTTTCCCAATTATTAGAGCCGATGTTAATGGTGT
TAATGGGAATTATTGTAGGAGCTATTTTAGTCGGGTTATATTTGCCGATTTTTGATATGGGAGCAATGATAGAATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (267-389)

• Type II secretion system (T2SS), protein F (T2SSF) (63-186)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Glaesserella parasuis strain SC1401	98.744	100	0.987
pilC	Haemophilus influenzae 86-028NP	38.404	100	0.387
pilC	Haemophilus influenzae Rd KW20	38.404	100	0.387