Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QBE03_RS19695 Genome accession   NZ_CP121698
Coordinates   4621798..4623351 (+) Length   517 a.a.
NCBI ID   WP_279361815.1    Uniprot ID   -
Organism   Xanthomonas sacchari strain DJ16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4616798..4628351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBE03_RS19675 speE 4619006..4619857 (+) 852 WP_017916998.1 polyamine aminopropyltransferase -
  QBE03_RS19680 - 4620109..4620840 (+) 732 WP_279361814.1 hypothetical protein -
  QBE03_RS19685 - 4621000..4621338 (-) 339 WP_010341856.1 P-II family nitrogen regulator -
  QBE03_RS19690 - 4621515..4621784 (+) 270 WP_010341857.1 accessory factor UbiK family protein -
  QBE03_RS19695 comM 4621798..4623351 (+) 1554 WP_279361815.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QBE03_RS19700 - 4623432..4624271 (-) 840 WP_279361816.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 54974.74 Da        Isoelectric Point: 8.6987

>NTDB_id=814010 QBE03_RS19695 WP_279361815.1 4621798..4623351(+) (comM) [Xanthomonas sacchari strain DJ16]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPTTQIVGLPEAAVRESRDRVRAALLCAQYEFPARRITVNLAPADLPKEGGR
FDLPIALGILAAAGQLDPQVLGQYEFLGELALTGELRPVDGVLPAALAAAQAGRTLIVPADNGAEAALAQHVQAYTARTL
LEVCGLLNGSKTLPAATAPPTVAAPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALESAAIASVSGRGVDPARWRQRPYRAPHHTASAVSLVGGGTHPRPGEISLAHHGVLFLDELPEWNRHALEVLREPLESG
QVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDPSGRCRCSEDAVRRYRARISGPLLDRIDLHVEVPRLPPQALRADAPP
GESSAAVRERVEQARQRQQARAGRPNGQLGHSETLRDCRLQPRDEALLEQAIERLRLSARSLHRILRVARTIADLDASER
IATAHLTEAIAYRQLDRGEPTASAVGPTPPGARRLAG

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=814010 QBE03_RS19695 WP_279361815.1 4621798..4623351(+) (comM) [Xanthomonas sacchari strain DJ16]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAAGTCCATCTGTCCGG
CGGCCTGCCGACCACCCAGATCGTCGGCCTGCCCGAGGCGGCGGTACGCGAGTCGCGCGATCGCGTCCGCGCCGCCCTGC
TCTGCGCGCAGTACGAATTTCCGGCACGGCGGATCACCGTCAACCTGGCGCCGGCCGACCTGCCCAAGGAGGGCGGTCGC
TTCGACCTACCGATCGCGCTGGGCATCCTCGCCGCCGCCGGCCAGCTCGACCCGCAGGTGCTCGGCCAGTACGAATTCCT
CGGTGAACTGGCCTTGACCGGCGAACTGCGTCCGGTCGACGGCGTCCTGCCGGCCGCACTGGCCGCCGCCCAGGCTGGAC
GCACCCTGATCGTCCCGGCCGACAACGGCGCCGAGGCCGCACTGGCGCAACACGTGCAGGCCTACACCGCACGCACCCTG
CTGGAAGTCTGTGGATTGCTCAACGGCAGCAAGACCCTGCCCGCGGCAACCGCGCCGCCCACGGTCGCCGCCCCCTTTCC
CGACCTGAGCGACGTGCGCGGCCAGGCGCAGGCGCGGCGCGCCCTGGAGATCGCCGCGGCCGGGCATCACCACCTGTTGC
TGATCGGCAGCCCCGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGGATCCTGCCCGAGGCCAGCGAAGCCGAG
GCCCTGGAGAGCGCGGCCATCGCTTCGGTCAGCGGCCGCGGCGTGGATCCGGCGCGCTGGCGGCAACGCCCCTACCGCGC
ACCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGCACTCATCCGCGCCCGGGCGAGATCTCGCTCGCGCACC
ACGGCGTGCTGTTCCTGGACGAACTTCCGGAGTGGAACCGGCATGCGCTGGAAGTGCTGCGCGAGCCGTTGGAATCGGGC
CAGGTGACCGTGTCGCGCGCGGCGCGCAGCGCCGAGTTTCCTGCGCGCTTCCAGTTGGTCGCGGCGATGAATCCCTGCCC
CTGCGGCTGGGCCGGCGACCCCAGCGGCCGCTGTCGCTGCAGCGAGGACGCGGTGCGGCGCTATCGCGCGCGCATCTCCG
GCCCACTGCTGGACCGCATCGACCTGCACGTGGAAGTGCCGCGGCTGCCGCCACAGGCGTTGCGCGCCGATGCGCCGCCA
GGCGAGTCCAGTGCCGCCGTGCGCGAACGCGTGGAGCAGGCGCGGCAACGCCAGCAGGCCCGCGCCGGCCGGCCCAACGG
CCAACTCGGCCACAGCGAAACCCTGCGCGACTGCCGCCTGCAACCGCGCGACGAGGCGCTGCTGGAACAGGCCATCGAGC
GCCTGCGGCTGTCGGCGCGCTCGCTGCATCGGATCCTGCGCGTGGCCCGCACCATCGCCGACCTGGACGCCAGCGAGCGC
ATCGCCACCGCGCACCTGACCGAGGCCATCGCGTACCGGCAACTGGATCGTGGCGAGCCAACGGCGAGCGCCGTGGGTCC
GACGCCACCCGGGGCACGCCGCCTGGCAGGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.711

96.518

0.538
  comM Haemophilus influenzae Rd KW20

54.762

97.485

0.534
  comM Vibrio campbellii strain DS40M4

54.224

98.453

0.534
  comM Glaesserella parasuis strain SC1401

52.976

97.485

0.516
  comM Legionella pneumophila str. Paris

50.503

96.132

0.485
  comM Legionella pneumophila strain ERS1305867

50.503

96.132

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.776

98.453

0.451