Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   QBE57_RS08815 Genome accession   NZ_CP121670
Coordinates   1785511..1786707 (-) Length   398 a.a.
NCBI ID   WP_012028059.1    Uniprot ID   D5AF49
Organism   Streptococcus suis strain HBXY-SL     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1780511..1791707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBE57_RS08790 - 1780634..1780837 (-) 204 WP_011922523.1 DUF951 domain-containing protein -
  QBE57_RS08795 - 1780847..1781728 (-) 882 WP_011921629.1 diacylglycerol/lipid kinase family protein -
  QBE57_RS08800 dnaN 1781820..1782956 (-) 1137 WP_004194538.1 DNA polymerase III subunit beta -
  QBE57_RS08805 dnaA 1783110..1784483 (-) 1374 WP_011921628.1 chromosomal replication initiator protein DnaA -
  QBE57_RS08810 spo0J 1784686..1785450 (-) 765 WP_012775418.1 ParB/RepB/Spo0J family partition protein Regulator
  QBE57_RS08815 htrA 1785511..1786707 (-) 1197 WP_012028059.1 S1C family serine protease Regulator
  QBE57_RS08820 rlmH 1786881..1787360 (+) 480 WP_012028058.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  QBE57_RS08825 - 1787385..1788068 (+) 684 WP_012775416.1 YoaK family protein -
  QBE57_RS08845 - 1788469..1791048 (-) 2580 WP_012028056.1 YfhO family protein -

Sequence


Protein


Download         Length: 398 a.a.        Molecular weight: 41866.92 Da        Isoelectric Point: 4.6543

>NTDB_id=813806 QBE57_RS08815 WP_012028059.1 1785511..1786707(-) (htrA) [Streptococcus suis strain HBXY-SL]
MERIPYMKKYLKFAILFVIGFFGGLIGALSASFFQPQVQQANSAITSVSNVQYNNETSTTKAVEKVQNAVVSVINYQKSA
NNSLGVIFGNIESSDELAVAGEGSGVIYKKYGQYAYIVTNTHVINNAEKIDILLASGEKISGELVGSDTYSDIAVIKISA
DKVTAVAEFADSDTIKVGETAIAIGSPLGSVYANTVTQGIISSLSRTVTSQSKDGQTISTNAIQTDTAINPGNSGGPLIN
TQGQVIGITSSKITSSSANSSGVAVEGLGFAIPANDAVAIINQLEKTGQVSRPALGVHMVNLTTLSTSQLEKAGLSNTEL
TSGVVIVSTQSGLPADGKLETFDVITEIDGEAIQNKSDLQSALYKHQIGDTITVTYYRNNQKQTVDIKLTHSTEELSE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=813806 QBE57_RS08815 WP_012028059.1 1785511..1786707(-) (htrA) [Streptococcus suis strain HBXY-SL]
ATGGAAAGGATTCCTTATATGAAAAAATATTTGAAATTTGCGATTTTATTTGTAATTGGATTTTTTGGGGGTCTTATCGG
GGCCTTGTCAGCCTCTTTCTTCCAGCCACAGGTGCAACAAGCAAATTCTGCTATCACTAGTGTCAGCAATGTTCAATATA
ATAATGAAACTTCCACCACAAAAGCTGTAGAGAAAGTACAAAATGCTGTTGTGTCTGTTATTAATTACCAAAAATCAGCC
AACAATAGTCTTGGTGTTATCTTTGGAAATATTGAATCATCTGACGAACTAGCTGTTGCTGGAGAGGGGTCTGGGGTTAT
CTATAAAAAATATGGTCAATATGCCTATATTGTGACAAATACGCATGTTATTAATAACGCAGAAAAGATTGATATCCTTT
TAGCATCTGGAGAAAAAATTAGCGGTGAACTTGTTGGTTCCGATACATATTCTGATATAGCTGTTATAAAAATATCAGCA
GATAAAGTCACTGCTGTTGCTGAATTTGCTGATTCCGATACAATTAAAGTTGGAGAAACTGCTATCGCAATTGGTAGTCC
TCTAGGTAGCGTCTACGCCAATACAGTTACCCAGGGTATTATTTCTAGCTTAAGTCGGACAGTTACTTCACAATCAAAAG
ATGGACAAACAATCTCAACTAACGCTATTCAAACTGATACAGCTATCAACCCTGGAAACTCTGGCGGACCGTTAATCAAT
ACCCAAGGACAAGTGATAGGCATTACCTCTAGCAAAATTACCTCAAGTTCTGCAAATAGCTCAGGCGTGGCTGTAGAAGG
GTTGGGATTTGCTATTCCTGCAAATGATGCCGTAGCTATTATCAATCAGCTTGAAAAAACTGGACAAGTTAGCCGACCTG
CTCTTGGAGTTCATATGGTTAACTTGACGACCTTGTCAACTAGTCAATTAGAAAAAGCTGGATTATCAAATACGGAATTA
ACATCCGGTGTAGTAATTGTCTCTACACAAAGTGGGCTACCTGCAGATGGAAAATTAGAAACTTTTGATGTTATTACTGA
GATTGACGGAGAAGCTATTCAAAATAAGAGTGACCTCCAGAGCGCTCTCTACAAACATCAAATTGGAGATACAATCACTG
TAACTTATTACCGCAATAATCAGAAACAAACTGTTGACATTAAGTTGACACATTCTACAGAAGAACTTAGCGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB D5AF49

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

59.194

99.749

0.59

  htrA Streptococcus gordonii str. Challis substr. CH1

58.987

99.246

0.585

  htrA Streptococcus pneumoniae D39

57.252

98.744

0.565

  htrA Streptococcus pneumoniae TIGR4

57.252

98.744

0.565

  htrA Streptococcus mitis NCTC 12261

57.252

98.744

0.565

  htrA Streptococcus pneumoniae R6

57.252

98.744

0.565

  htrA Streptococcus pneumoniae Rx1

57.252

98.744

0.565