Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   R8474_RS04060 Genome accession   NZ_AP026914
Coordinates   790398..790946 (+) Length   182 a.a.
NCBI ID   WP_232034740.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700003     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 785398..795946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8474_RS04035 (PC0003_07990) - 786815..786952 (+) 138 WP_000718654.1 hypothetical protein -
  R8474_RS04040 (PC0003_08010) - 787746..787964 (+) 219 Protein_798 hypothetical protein -
  R8474_RS04045 - 788264..789290 (-) 1027 Protein_799 IS630 family transposase -
  R8474_RS04055 - 789546..790351 (+) 806 Protein_800 IS5 family transposase -
  R8474_RS04060 (PC0003_08060) comA 790398..790946 (+) 549 WP_232034740.1 ATP-binding cassette domain-containing protein Regulator
  R8474_RS04065 (PC0003_08070) - 790959..791129 (+) 171 WP_000711943.1 hypothetical protein -
  R8474_RS04070 (PC0003_08080) gdhA 791625..792971 (-) 1347 WP_000199560.1 NADP-specific glutamate dehydrogenase -
  R8474_RS04075 - 793505..794048 (+) 544 Protein_804 transposase -
  R8474_RS04080 (PC0003_08090) - 794045..794263 (+) 219 WP_000028153.1 hypothetical protein -
  R8474_RS04085 (PC0003_08100) - 794320..794562 (-) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  R8474_RS04090 (PC0003_08110) - 794658..795593 (-) 936 WP_000401770.1 bifunctional oligoribonuclease/PAP phosphatase NrnA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20426.75 Da        Isoelectric Point: 8.9121

>NTDB_id=81350 R8474_RS04060 WP_232034740.1 790398..790946(+) (comA) [Streptococcus pneumoniae strain PZ900700003]
MDTGKVLFYGININQIDKKILSQNLGVVPQDSFLLNRSILDNITLKHEVTSQKIEEVCKAVQIYDEIMAMPMKFNTIISE
MGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIQSQGCTQIIIAHRLSTIKNADIIFVMKGGKIVE
SGNHKYLMTLGGEYYSLYTKRK

Nucleotide


Download         Length: 549 bp        

>NTDB_id=81350 R8474_RS04060 WP_232034740.1 790398..790946(+) (comA) [Streptococcus pneumoniae strain PZ900700003]
ATTGATACAGGAAAAGTTTTATTTTATGGTATAAATATTAATCAAATAGATAAAAAAATATTAAGTCAAAATTTAGGAGT
AGTTCCACAGGATTCATTTTTATTGAACCGAAGTATTCTTGATAATATAACTTTAAAGCACGAAGTTACTTCACAAAAGA
TAGAGGAAGTTTGTAAAGCAGTTCAAATCTATGATGAAATCATGGCTATGCCGATGAAATTTAATACTATCATCTCAGAG
ATGGGGTCAAATATTTCAGGTGGGCAAAGGCAACGGATAGCACTGGCACGTGCATTAATAAATAATCCTAGTATTGTAAT
TTTAGATGAAGCAACTAGTGCATTAGACACTATTAATGAGGAAAGAATAACAAAGTATATACAAAGTCAGGGTTGTACTC
AAATAATTATAGCTCATAGATTGTCAACGATTAAGAATGCGGATATTATTTTTGTAATGAAAGGTGGTAAGATTGTTGAG
TCAGGAAATCATAAGTACTTAATGACTCTTGGTGGAGAGTACTACAGCTTATATACAAAAAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(2-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

42.697

97.802

0.418
  comA/nlmT Streptococcus mutans UA159

42.697

97.802

0.418
  comA Streptococcus mitis NCTC 12261

43.182

96.703

0.418
  comA Streptococcus mitis SK321

42.614

96.703

0.412
  comA Streptococcus pneumoniae R6

42.045

96.703

0.407
  comA Streptococcus pneumoniae Rx1

42.045

96.703

0.407
  comA Streptococcus pneumoniae D39

42.045

96.703

0.407
  comA Streptococcus pneumoniae TIGR4

40.909

96.703

0.396
  rcrQ Streptococcus mutans UA159

36.216

100

0.368

Multiple sequence alignment