Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QA712_RS04850 Genome accession   NZ_CP121539
Coordinates   869199..870188 (-) Length   329 a.a.
NCBI ID   WP_332528960.1    Uniprot ID   -
Organism   Lactococcus lactis strain MA5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 864199..875188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA712_RS04835 (QA712_04815) - 865565..866491 (-) 927 WP_042230563.1 peptidyl-prolyl cis-trans isomerase -
  QA712_RS04840 (QA712_04820) - 866645..867328 (-) 684 WP_047206626.1 O-methyltransferase -
  QA712_RS04845 (QA712_04825) pepF 867331..869136 (-) 1806 WP_372757792.1 oligoendopeptidase F Regulator
  QA712_RS04850 (QA712_04830) coiA 869199..870188 (-) 990 WP_332528960.1 competence protein CoiA Machinery gene
  QA712_RS04855 (QA712_04835) - 870260..871345 (-) 1086 WP_332528959.1 YdcF family protein -
  QA712_RS04860 (QA712_04840) - 871498..872346 (-) 849 WP_153241501.1 alpha/beta hydrolase -
  QA712_RS04865 (QA712_04845) - 872556..873977 (-) 1422 WP_332528958.1 NCS2 family permease -
  QA712_RS04870 (QA712_04850) - 874284..875120 (+) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39516.18 Da        Isoelectric Point: 9.0820

>NTDB_id=812855 QA712_RS04850 WP_332528960.1 869199..870188(-) (coiA) [Lactococcus lactis strain MA5]
MLTAIDENKKIVNLLEIEVKKLTGKYFCPSCKSELFIKNGEIKMPHFAHKSLNACDLWLENESEQHLGLKKELYQWFKKT
DKVEIEAYLPELKQRPDLLVNDKIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGENLWLKDQITNLQKNLVYFSENR
GFYYWELDFKTQKLRLKSLIHEDLRGKIIYLQEEIPFGQGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDEIPLHKFTQIKQNINLYYENFLINFQQNSFKAVYPPRFYAIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=812855 QA712_RS04850 WP_332528960.1 869199..870188(-) (coiA) [Lactococcus lactis strain MA5]
ATGCTGACAGCAATTGACGAAAATAAAAAAATAGTAAACTTATTAGAAATAGAAGTAAAAAAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGCCCCACTTTGCTCATAAATCTCTCAATG
CTTGCGACTTATGGCTTGAAAATGAATCTGAACAACATTTAGGATTAAAAAAAGAACTCTATCAATGGTTTAAGAAAACT
GATAAGGTGGAAATTGAAGCTTACCTTCCTGAACTTAAACAGAGGCCAGATTTATTGGTAAATGATAAAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAACGGACAGAAAATTATCAAGTACACGGTTTTACGGTGCTTT
GGCTTATGGGGGAAAATTTATGGTTAAAAGACCAAATAACAAACCTTCAAAAAAATTTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAATTAGATTTTAAAACTCAGAAGCTGAGATTGAAGTCACTGATTCATGAAGATTTGCGTGGGAA
AATTATTTATTTACAAGAAGAAATCCCTTTTGGTCAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCGGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCATTTATTGCTCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATGAAATCCCTTTACATAAATTTACTCAAATTAAGCAGAATATTAATC
TCTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGCAGTCTATCCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

75.767

99.088

0.751
  coiA Streptococcus mitis NCTC 12261

44.41

97.872

0.435
  coiA Streptococcus pneumoniae TIGR4

44.099

97.872

0.432
  coiA Streptococcus pneumoniae Rx1

44.099

97.872

0.432
  coiA Streptococcus pneumoniae D39

44.099

97.872

0.432
  coiA Streptococcus pneumoniae R6

44.099

97.872

0.432