Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QA712_RS04845 Genome accession   NZ_CP121539
Coordinates   867331..869136 (-) Length   601 a.a.
NCBI ID   WP_372757792.1    Uniprot ID   -
Organism   Lactococcus lactis strain MA5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 862331..874136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA712_RS04830 (QA712_04810) alaS 862682..865300 (-) 2619 WP_047206625.1 alanine--tRNA ligase -
  QA712_RS04835 (QA712_04815) - 865565..866491 (-) 927 WP_042230563.1 peptidyl-prolyl cis-trans isomerase -
  QA712_RS04840 (QA712_04820) - 866645..867328 (-) 684 WP_047206626.1 O-methyltransferase -
  QA712_RS04845 (QA712_04825) pepF 867331..869136 (-) 1806 WP_372757792.1 oligoendopeptidase F Regulator
  QA712_RS04850 (QA712_04830) coiA 869199..870188 (-) 990 WP_332528960.1 competence protein CoiA Machinery gene
  QA712_RS04855 (QA712_04835) - 870260..871345 (-) 1086 WP_332528959.1 YdcF family protein -
  QA712_RS04860 (QA712_04840) - 871498..872346 (-) 849 WP_153241501.1 alpha/beta hydrolase -
  QA712_RS04865 (QA712_04845) - 872556..873977 (-) 1422 WP_332528958.1 NCS2 family permease -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 70143.96 Da        Isoelectric Point: 4.8207

>NTDB_id=812854 QA712_RS04845 WP_372757792.1 867331..869136(-) (pepF) [Lactococcus lactis strain MA5]
MAKNRNEIPEKLTWDLTTIYKTDNEWEAELTRIKSELPLVEETDPGHLLDSAESLLTITEKMLSISQQVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVKFGEVYAFYEPEFLKITKEVYNKWLEELQKLKNYDHMFERLFAKKAHILSQKEEKLLAA
AGEIFESPSETFEIFDNADINLPMVKNESDEMVQLTHGNYSSLMESKNREVRKAAYKALYSNYEQYQHTYAKTLQTNVKV
HNLNAQIRSYVSARQAALANNFVPEKVYDVLMEAIHQHLPLLHRYIELRKKILGISDFKMYDIYTPLSNLDYKFNYEDGM
KKAEEVLAIFGKEYKEKVKAAFEQRWIDVEENIGKRSGAYSGGSYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSAFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESKDDKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEADDAGEVLTSE
YLNSLYGEINEKYYNLAAKENPEIQYEWARIPHFYYNFYVFQYATGFAAATFLAEKVVHGSTEDRQKYLEYLKAGSSAYP
LEVIAKAGVDMESTDYLDAAFELFENRLSELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=812854 QA712_RS04845 WP_372757792.1 867331..869136(-) (pepF) [Lactococcus lactis strain MA5]
ATGGCTAAGAATAGAAATGAAATTCCTGAAAAATTAACTTGGGATTTGACAACAATTTATAAAACAGATAATGAATGGGA
AGCAGAGCTAACTAGAATAAAAAGCGAACTTCCACTCGTTGAAGAGACAGACCCTGGTCATCTACTTGATTCAGCTGAAA
GTCTTCTGACAATTACCGAAAAAATGCTATCCATTTCTCAACAAGTTGAAAAACTATATGTTTATGCTTCAATGAAAAAT
GATCAAGATACCAGAGAGGCTAAATATCAGGAGTATCAATCAAAAGCAACAGCCCTCTATGTGAAATTCGGAGAGGTCTA
CGCCTTCTATGAACCTGAATTTTTAAAAATTACAAAAGAGGTCTATAACAAATGGCTGGAGGAGCTTCAAAAATTAAAAA
ACTATGACCATATGTTTGAGCGCCTTTTTGCAAAAAAAGCGCATATTCTTAGTCAAAAAGAGGAAAAGTTATTAGCTGCG
GCTGGTGAAATTTTTGAAAGCCCTTCAGAAACTTTTGAAATTTTTGATAATGCAGATATTAACTTACCTATGGTCAAAAA
TGAATCTGATGAGATGGTCCAACTCACACATGGGAATTACTCTTCTTTAATGGAAAGTAAGAATAGGGAAGTACGAAAAG
CAGCCTACAAAGCACTTTATAGTAATTATGAACAATATCAGCATACTTATGCAAAAACCTTGCAGACCAATGTAAAAGTC
CATAATCTTAATGCCCAAATCCGCTCTTATGTTTCAGCCCGTCAAGCTGCTCTGGCAAATAATTTTGTTCCAGAAAAAGT
TTATGATGTTTTGATGGAGGCTATTCATCAACATTTGCCACTTTTACATCGCTATATTGAACTACGCAAGAAGATTTTAG
GAATTTCTGATTTCAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTTAACTATGAAGATGGAATG
AAAAAAGCAGAGGAAGTTTTAGCGATATTTGGTAAAGAATATAAAGAAAAAGTTAAAGCAGCTTTTGAACAAAGATGGAT
TGATGTCGAAGAAAATATCGGAAAACGTTCGGGTGCTTATTCAGGTGGATCTTATGATACCAATGCTTTTATGCTTCTCA
ATTGGCAAGAAACATTAGATGATCTTTTTACTTTAGTTCATGAAATGGGGCACTCAATGCATAGTGCTTTCACGCGTGAA
AATCAACCTTATGTTTATGGGGATTATCCAATCTTTTTAGCTGAAATTGCCTCAACCACAAATGAAAATATTTTAACTGA
AACTTTATTAAAGGAAAGTAAAGATGATAAAGAGCGCTTCGCCCTTTTGAACCACTGGCTTGATAGTTTCCGTGGAACTG
TTTTCCGTCAGAGTCAATTTGCCGAATTTGAACAAAAAATTCATGAAGCAGATGATGCCGGCGAAGTTTTAACAAGTGAA
TACTTAAACTCACTTTATGGCGAAATAAATGAAAAATACTATAATTTAGCAGCCAAAGAAAATCCAGAAATTCAGTATGA
ATGGGCTAGAATTCCGCATTTTTATTATAATTTCTATGTTTTTCAATACGCAACAGGTTTTGCTGCGGCAACTTTCTTAG
CTGAAAAAGTTGTTCATGGTTCAACTGAGGATCGTCAAAAATATCTTGAATATTTGAAGGCTGGTTCTTCAGCTTATCCT
TTAGAAGTAATTGCGAAAGCTGGAGTTGATATGGAATCTACCGATTATTTAGATGCCGCCTTTGAGCTTTTTGAAAATCG
ATTGAGTGAATTAGAAAAATTAGTTGAAAAAGGAGTCCATCTTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-582)

Oligopeptidase F (Peptidase_M3_N)

(113-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.226

100

0.642