Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RS156_RS16770 Genome accession   NZ_CP135722
Coordinates   3488064..3488828 (-) Length   254 a.a.
NCBI ID   WP_001136198.1    Uniprot ID   -
Organism   Escherichia coli strain TUM1223     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3483064..3493828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS156_RS16760 (RS156_16760) nikR 3486855..3487256 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  RS156_RS16765 (RS156_16765) nikE 3487261..3488067 (-) 807 WP_001521512.1 nickel import ATP-binding protein NikE -
  RS156_RS16770 (RS156_16770) amiE 3488064..3488828 (-) 765 WP_001136198.1 nickel import ATP-binding protein NikD Regulator
  RS156_RS16775 (RS156_16775) nikC 3488828..3489661 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  RS156_RS16780 (RS156_16780) nikB 3489658..3490602 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  RS156_RS16785 (RS156_16785) nikA 3490602..3492176 (-) 1575 WP_000493127.1 nickel ABC transporter substrate-binding protein -
  RS156_RS16790 (RS156_16790) acpT 3492287..3492874 (-) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26843.46 Da        Isoelectric Point: 6.6886

>NTDB_id=812331 RS156_RS16770 WP_001136198.1 3488064..3488828(-) (amiE) [Escherichia coli strain TUM1223]
MPQQIELRDIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=812331 RS156_RS16770 WP_001136198.1 3488064..3488828(-) (amiE) [Escherichia coli strain TUM1223]
ATGCCGCAACAGATTGAACTGCGCGATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGTGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCGCTACACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGTTGGAAAACGCCGCGCGCGTGT
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGTTGTGTGAATCGCCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACACGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

42

98.425

0.413
  amiE Streptococcus thermophilus LMD-9

42

98.425

0.413
  amiE Streptococcus salivarius strain HSISS4

40.8

98.425

0.402