Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   fh0823_RS13730 Genome accession   NZ_AP023082
Coordinates   1624405..1624842 (-) Length   145 a.a.
NCBI ID   WP_255321833.1    Uniprot ID   -
Organism   Francisella halioticida strain UTH170823     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1619405..1629842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  fh0823_RS08935 (fh0823_19380) nusA 1619473..1620942 (-) 1470 WP_212789472.1 transcription termination factor NusA -
  fh0823_RS08940 (fh0823_19390) rimP 1620959..1621414 (-) 456 WP_169709736.1 ribosome maturation factor RimP -
  fh0823_RS08950 (fh0823_19400) hemE 1621643..1622677 (-) 1035 WP_088773289.1 uroporphyrinogen decarboxylase -
  fh0823_RS08955 (fh0823_19410) - 1622915..1623238 (+) 324 WP_212789473.1 transposase -
  fh0823_RS08960 (fh0823_19420) - 1623255..1623470 (+) 216 WP_088771820.1 hypothetical protein -
  fh0823_RS08965 (fh0823_19430) - 1623428..1623979 (+) 552 WP_212789474.1 IS3 family transposase -
  fh0823_RS13725 (fh0823_19440) - 1623961..1624329 (-) 369 WP_245806450.1 ATP-binding protein -
  fh0823_RS13730 (fh0823_19450) comM 1624405..1624842 (-) 438 WP_255321833.1 magnesium chelatase domain-containing protein Machinery gene
  fh0823_RS08975 (fh0823_19460) - 1624844..1625038 (-) 195 WP_212789475.1 accessory factor UbiK family protein -
  fh0823_RS08980 (fh0823_19470) - 1625112..1626563 (-) 1452 WP_088773291.1 NADH-quinone oxidoreductase subunit N -
  fh0823_RS08985 (fh0823_19480) - 1626579..1628168 (-) 1590 WP_088773292.1 complex I subunit 4 family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15678.51 Da        Isoelectric Point: 10.8733

>NTDB_id=81232 fh0823_RS13730 WP_255321833.1 1624405..1624842(-) (comM) [Francisella halioticida strain UTH170823]
MSLAILKSRAQLGIEAPSVSIKVHLSNGLPGLSIVGLPEAAVKESKDRVRSAIINSGFNFPNKRITINLAPADLLKSSGR
FDLPIALGVLYASRQINPTKKIDDYKFAGELSLSGKLRKISSAISMVIKCVQNNKKLIIPLQNEK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=81232 fh0823_RS13730 WP_255321833.1 1624405..1624842(-) (comM) [Francisella halioticida strain UTH170823]
ATGTCTTTAGCAATATTAAAAAGTAGAGCTCAGCTCGGTATTGAGGCTCCATCAGTATCTATAAAAGTTCATTTATCCAA
TGGGTTGCCAGGATTATCAATAGTTGGTCTACCTGAAGCAGCTGTTAAAGAAAGTAAAGATCGTGTCCGTAGTGCAATTA
TAAACTCGGGTTTTAATTTTCCAAATAAACGAATAACTATAAATCTTGCTCCTGCTGATTTGCTTAAAAGTAGCGGACGT
TTCGATTTGCCAATAGCATTAGGTGTTTTATACGCTTCTAGACAAATTAATCCAACCAAAAAAATTGATGATTATAAGTT
TGCTGGCGAATTATCTTTAAGTGGAAAACTTAGGAAAATATCTAGTGCTATCTCAATGGTAATAAAATGCGTACAGAATA
ATAAAAAACTTATTATTCCACTTCAAAATGAAAAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

58.741

98.621

0.579
  comM Vibrio cholerae strain A1552

56.643

98.621

0.559
  comM Glaesserella parasuis strain SC1401

55.944

98.621

0.552
  comM Legionella pneumophila strain ERS1305867

56.934

94.483

0.538
  comM Legionella pneumophila str. Paris

56.934

94.483

0.538
  comM Haemophilus influenzae Rd KW20

53.147

98.621

0.524
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.537

92.414

0.393

Multiple sequence alignment