Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Thiofri_RS07205 Genome accession   NZ_CP121471
Coordinates   1546038..1547621 (-) Length   527 a.a.
NCBI ID   WP_009151020.1    Uniprot ID   H8Z5W7
Organism   Thiorhodovibrio frisius strain 970     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1541038..1552621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Thiofri_RS07195 (Thiofri_01489) - 1543547..1544098 (-) 552 WP_009151018.1 DUF2939 domain-containing protein -
  Thiofri_RS07200 (Thiofri_01490) - 1544095..1546041 (-) 1947 WP_009151019.1 ATP-binding cassette domain-containing protein -
  Thiofri_RS07205 (Thiofri_01491) comM 1546038..1547621 (-) 1584 WP_009151020.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Thiofri_RS07210 (Thiofri_01492) ubiK 1547676..1547933 (-) 258 WP_009151021.1 ubiquinone biosynthesis accessory factor UbiK -
  Thiofri_RS07215 (Thiofri_01493) - 1548261..1549154 (+) 894 WP_009151022.1 TorF family putative porin -
  Thiofri_RS07220 (Thiofri_01494) - 1549248..1549586 (+) 339 WP_009151023.1 P-II family nitrogen regulator -
  Thiofri_RS07225 (Thiofri_01495) - 1549685..1550908 (+) 1224 WP_407702930.1 ammonium transporter -
  Thiofri_RS07230 (Thiofri_01496) - 1551003..1552292 (-) 1290 WP_009151025.1 sodium:proton antiporter -

Sequence

Protein


Download         Length: 527 a.a.        Molecular weight: 56272.08 Da        Isoelectric Point: 8.0010

>NTDB_id=812290 Thiofri_RS07205 WP_009151020.1 1546038..1547621(-) (comM) [Thiorhodovibrio frisius strain 970]
MGLSILHSRAPYGIQALEVIVEVQTAGGLPGLSIVGLPEMAVRESKDRVRGALRSGSFQFPDGRVTINLAPADLPKDGGR
FDLPIALGILGASGQLQPEAIAEHEFLGELALSGALRPVSGVLPSALAARAAGRALVLPVENADEASLVRDLRILPARHL
LDVCQHLNQIEPLAPHQTQPAAEADSAPLSDLAEVRGQPQAKRALEIAAAGAHSLLFVGPPGTGKSMLASRLPGILPPLT
EEEALEAAAVRSVVGREQLDRSRWRERPFRAPHHTASGPALVGGGSHPRPGEISLAHHGVLFLDELPEFDRRVLEVLREP
LESGRIHISRAARQAEFPARFQLLAAMNPCPCGYLGDPSGRCHCTAEQVARYRARISGPLLDRIDMQLEVPRLSPTELAG
PRPPTESSAAVRERVCAARARAETRGGGPNSQLQPAGIEQHCQLDDTSRALISTAMQRLGLSARAYHRILKLARTIADLD
DSPAITPAHLSEAIGYRRLDRGDAADQTAGQRSNRQSSPKTNRASRA

Nucleotide


Download         Length: 1584 bp        

>NTDB_id=812290 Thiofri_RS07205 WP_009151020.1 1546038..1547621(-) (comM) [Thiorhodovibrio frisius strain 970]
GTGGGCCTCAGCATTCTCCATAGCCGTGCCCCCTATGGCATTCAGGCGCTTGAGGTGATTGTCGAGGTGCAGACCGCTGG
CGGCCTGCCCGGCCTGTCCATCGTTGGATTACCCGAAATGGCCGTGCGCGAGAGCAAGGACCGGGTGCGCGGCGCGCTGC
GCAGCGGCAGTTTTCAATTTCCGGACGGGCGCGTGACCATCAATCTCGCACCGGCGGATTTACCCAAGGATGGTGGCCGC
TTCGATCTGCCCATCGCGCTTGGCATTCTTGGTGCTTCCGGGCAATTGCAGCCCGAGGCCATCGCCGAGCATGAGTTTCT
GGGCGAACTGGCCCTTTCCGGCGCCCTGCGGCCAGTTTCGGGCGTGCTGCCCTCGGCACTGGCAGCGCGCGCTGCCGGAC
GCGCGCTGGTGCTACCGGTCGAAAACGCCGATGAGGCCAGCCTGGTGCGCGATCTGCGCATCCTGCCCGCGCGCCACCTG
CTCGATGTCTGTCAGCATCTGAATCAGATCGAGCCGCTGGCGCCTCACCAAACCCAACCCGCCGCCGAAGCCGACAGCGC
ACCACTGTCCGACCTGGCCGAGGTTCGCGGCCAGCCCCAGGCTAAGCGGGCACTGGAAATCGCCGCCGCCGGTGCTCATA
GCCTGCTGTTCGTCGGCCCGCCCGGCACCGGCAAATCCATGCTCGCGAGCCGCCTGCCCGGCATTCTGCCGCCGCTAACC
GAAGAAGAAGCCCTGGAGGCAGCGGCCGTGCGCTCTGTGGTGGGGCGAGAACAGCTGGATCGCAGCCGCTGGCGCGAACG
GCCCTTTCGCGCACCCCATCACACCGCCTCCGGACCAGCCCTGGTCGGGGGTGGCAGTCATCCACGACCAGGTGAGATTT
CGCTTGCACATCATGGAGTGCTCTTCCTTGATGAGCTGCCAGAATTCGATCGCCGGGTGCTGGAGGTACTGCGCGAGCCG
CTCGAATCCGGGCGCATTCACATTTCGCGTGCCGCGCGTCAGGCCGAATTCCCAGCGCGTTTTCAGCTCTTGGCCGCGAT
GAATCCCTGCCCCTGCGGTTACCTTGGTGACCCGAGCGGGCGCTGTCATTGCACTGCCGAGCAAGTCGCGCGCTATCGTG
CCCGTATTTCCGGCCCCCTGCTTGATCGCATCGATATGCAGTTAGAAGTCCCCAGGCTCAGCCCCACCGAGTTGGCCGGC
CCGCGGCCCCCTACTGAATCCAGCGCGGCGGTGCGCGAGCGGGTGTGCGCTGCACGCGCCCGCGCCGAGACGCGCGGCGG
CGGCCCCAACAGCCAGCTACAACCCGCTGGCATCGAACAACATTGTCAGCTCGATGACACCAGCCGCGCCCTGATCAGCA
CCGCCATGCAGCGCCTGGGGCTCTCGGCGCGCGCCTATCATCGAATCTTGAAGCTCGCGCGCACCATCGCCGATCTCGAC
GACAGTCCGGCCATCACTCCAGCGCATCTGAGCGAAGCCATCGGCTACCGCCGCCTTGATCGCGGGGACGCGGCTGACCA
AACAGCGGGCCAAAGATCAAACAGGCAATCAAGCCCGAAAACCAACAGGGCGTCACGGGCATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H8Z5W7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.09

95.066

0.524
  comM Vibrio cholerae strain A1552

54.491

95.066

0.518
  comM Haemophilus influenzae Rd KW20

53.373

95.636

0.51
  comM Glaesserella parasuis strain SC1401

52.183

95.636

0.499
  comM Legionella pneumophila str. Paris

49.9

94.687

0.472
  comM Legionella pneumophila strain ERS1305867

49.9

94.687

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.535

95.825

0.446