Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   P8P68_RS02905 Genome accession   NZ_CP121467
Coordinates   605121..605969 (-) Length   282 a.a.
NCBI ID   WP_216732820.1    Uniprot ID   -
Organism   Streptococcus sp. D7B5     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 600121..610969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8P68_RS02885 (P8P68_02885) - 601024..601680 (-) 657 WP_278276130.1 MmcQ/YjbR family DNA-binding protein -
  P8P68_RS02890 (P8P68_02890) - 601724..602356 (-) 633 WP_000638807.1 copper homeostasis protein CutC -
  P8P68_RS02895 (P8P68_02895) - 602450..602809 (-) 360 WP_001220359.1 YbaN family protein -
  P8P68_RS02900 (P8P68_02900) topA 602916..605003 (-) 2088 WP_278276131.1 type I DNA topoisomerase -
  P8P68_RS02905 (P8P68_02905) dprA/cilB/dalA 605121..605969 (-) 849 WP_216732820.1 DNA-processing protein DprA Machinery gene
  P8P68_RS02910 (P8P68_02910) - 606051..606674 (-) 624 WP_216732821.1 hypothetical protein -
  P8P68_RS02915 (P8P68_02915) lepA 606815..608638 (-) 1824 WP_278276132.1 translation elongation factor 4 -
  P8P68_RS02920 (P8P68_02920) - 608717..609445 (-) 729 WP_000133346.1 metallophosphoesterase family protein -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 31351.85 Da        Isoelectric Point: 5.2027

>NTDB_id=812208 P8P68_RS02905 WP_216732820.1 605121..605969(-) (dprA/cilB/dalA) [Streptococcus sp. D7B5]
MKITNYEIYKLRKAGLTNQQILTVLEYDETVDQELLLGDIAEISGCRNPAVFMERYFQIDDAQLEKEFQKFPSFSILDDC
YPWDLSEIYDAPALLFYKGNLDLLKFPKVAVVGSRSCSSQGAKSVQKIIQGLENELIVVSGLAKGIDTAAHMAALQNGGR
TIAVIGTGLDVFYPRYNKRLQEHIGNHHLILSEYGPGEEPLKFHFPARNRIIAGLCRGVIVAEARMRSGSLITCERAMEE
GRDVFAIPGNILDGHSDGCHHLIQEGAKLISSGQDVLAEFEF

Nucleotide


Download         Length: 849 bp        

>NTDB_id=812208 P8P68_RS02905 WP_216732820.1 605121..605969(-) (dprA/cilB/dalA) [Streptococcus sp. D7B5]
ATGAAGATCACAAACTATGAGATTTACAAATTGAGAAAAGCTGGGCTGACCAATCAACAAATTTTAACTGTTCTTGAATA
CGACGAGACTGTAGATCAGGAGCTCTTGCTAGGTGATATTGCAGAAATATCTGGATGTCGTAATCCTGCTGTCTTTATGG
AACGCTATTTCCAGATAGATGATGCACAGTTGGAGAAGGAGTTTCAGAAATTTCCATCCTTCTCGATTCTTGATGACTGT
TATCCTTGGGATCTGAGTGAGATTTATGATGCTCCAGCGCTCTTGTTTTATAAAGGAAATCTAGACTTATTGAAATTTCC
AAAGGTTGCTGTTGTAGGGAGTCGTTCTTGTTCGAGCCAAGGAGCTAAGTCAGTCCAGAAAATTATCCAAGGTTTGGAAA
ACGAGTTAATTGTGGTCAGTGGTTTAGCCAAAGGGATTGATACGGCTGCCCATATGGCTGCACTCCAGAATGGAGGAAGA
ACGATTGCTGTCATTGGAACAGGATTGGATGTTTTTTATCCCCGATACAATAAACGTTTGCAGGAACACATTGGAAATCA
CCATTTGATACTTAGCGAATACGGACCAGGTGAGGAACCCTTGAAATTTCACTTTCCAGCTCGTAATCGCATCATTGCTG
GACTGTGCCGTGGTGTGATTGTAGCAGAGGCAAGGATGCGTTCGGGTAGTCTTATTACTTGTGAGCGAGCTATGGAGGAA
GGGCGTGATGTTTTTGCCATTCCAGGAAATATTTTAGATGGCCATTCAGATGGCTGTCACCACTTGATCCAAGAGGGAGC
AAAGCTGATTAGCAGTGGTCAAGATGTGCTGGCTGAGTTTGAATTTTAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(3-64)

DNA recombination-mediator protein A (DNA_processg_A)

(75-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

90.426

100

0.904
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

90.071

100

0.901
  dprA/cilB/dalA Streptococcus pneumoniae D39

90.071

100

0.901
  dprA/cilB/dalA Streptococcus pneumoniae R6

90.071

100

0.901
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

90.071

100

0.901
  dprA/cilB/dalA Streptococcus mitis SK321

90.071

100

0.901
  dprA Streptococcus mutans UA159

61.071

99.291

0.606
  dprA Lactococcus lactis subsp. cremoris KW2

54.643

99.291

0.543