Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   P8P68_RS01600 Genome accession   NZ_CP121467
Coordinates   330872..331828 (+) Length   318 a.a.
NCBI ID   WP_278276035.1    Uniprot ID   A0AAX3TJA0
Organism   Streptococcus sp. D7B5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 325872..336828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8P68_RS01585 (P8P68_01585) smpB 328130..328597 (+) 468 WP_001051743.1 SsrA-binding protein SmpB -
  P8P68_RS01590 (P8P68_01590) tehB 328612..329472 (+) 861 WP_278276033.1 SAM-dependent methyltransferase TehB -
  P8P68_RS01595 (P8P68_01595) - 329647..330795 (+) 1149 WP_278276034.1 hypothetical protein -
  P8P68_RS01600 (P8P68_01600) coiA 330872..331828 (+) 957 WP_278276035.1 competence protein CoiA family protein Machinery gene
  P8P68_RS01605 (P8P68_01605) pepF 331847..333649 (+) 1803 WP_278276036.1 oligoendopeptidase F Regulator
  P8P68_RS01610 (P8P68_01610) - 333651..334364 (+) 714 WP_278276038.1 O-methyltransferase -
  P8P68_RS01615 (P8P68_01615) prsA 334432..335373 (+) 942 WP_000728082.1 peptidylprolyl isomerase PrsA -
  P8P68_RS01620 (P8P68_01620) - 335562..336785 (+) 1224 WP_125825847.1 FtsW/RodA/SpoVE family cell cycle protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 38000.54 Da        Isoelectric Point: 9.5408

>NTDB_id=812202 P8P68_RS01600 WP_278276035.1 330872..331828(+) (coiA) [Streptococcus sp. D7B5]
MFVARDAKGNLVNALEKDVTRQDYTCPACGGGLRLRQGQSIRTHFAHERLRDCIAIFENESPEHLGNKEILYHWAKKDNQ
VALEYSLPKIQQIADVLVNEKLALEVQCSPLSQKLLGHRSQGYRSQGYQVIWLLGEKLWLKERLTQLQRGFLYYSQNMGF
YAWELDFKKQVLRLKYLLHQDLRGKLHFRVKEFPYGQGNLLEILRFPYQKQKLPRFAVEQDSSICHYIRQQLYYQTPYWM
KKQEEAYQRGDNLLNRQLDDWYPQVRPIESGDFLQIETDLTSYYRNFQAYYQKKPKNNCQKLYPPAFYHLYFSKNVVK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=812202 P8P68_RS01600 WP_278276035.1 330872..331828(+) (coiA) [Streptococcus sp. D7B5]
ATGTTTGTAGCCAGAGATGCCAAGGGAAATTTGGTGAATGCCCTCGAAAAAGACGTGACTAGGCAAGATTATACTTGTCC
AGCCTGTGGTGGTGGACTACGATTACGCCAAGGACAGAGCATTCGAACGCATTTTGCCCATGAAAGGTTAAGAGATTGCA
TCGCTATTTTTGAAAATGAAAGTCCAGAACACTTGGGCAACAAAGAGATCCTTTATCACTGGGCCAAGAAGGACAATCAG
GTCGCTTTAGAATATAGTCTGCCCAAGATTCAGCAAATAGCGGATGTTCTCGTCAATGAGAAACTAGCTCTGGAGGTCCA
GTGCAGTCCCTTGTCTCAAAAGCTTTTAGGTCATAGAAGTCAAGGCTACCGTAGTCAGGGATACCAAGTTATCTGGCTAC
TGGGAGAAAAACTCTGGTTAAAAGAGAGACTTACACAACTGCAAAGGGGATTTCTCTATTATAGTCAAAATATGGGTTTC
TATGCTTGGGAACTAGATTTCAAAAAGCAAGTTTTGAGACTCAAATACCTTTTGCATCAGGACCTACGTGGCAAGCTTCA
TTTTCGGGTCAAGGAGTTTCCCTATGGTCAAGGAAATCTCTTGGAAATTCTACGATTTCCTTATCAGAAACAAAAACTGC
CTCGTTTTGCAGTTGAGCAAGATTCATCTATCTGTCACTACATTCGCCAACAGTTGTACTACCAAACGCCCTACTGGATG
AAAAAGCAGGAGGAGGCTTATCAACGAGGAGACAATCTATTAAACCGTCAACTAGACGACTGGTATCCTCAAGTCAGACC
AATAGAATCAGGAGATTTTTTGCAGATTGAAACGGATTTGACTAGCTATTATAGAAATTTTCAGGCTTACTATCAAAAAA
AACCGAAAAATAATTGCCAAAAGCTCTATCCACCAGCCTTTTATCACTTATATTTCTCAAAAAATGTGGTAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(12-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae Rx1

69.497

100

0.695
  coiA Streptococcus pneumoniae D39

69.497

100

0.695
  coiA Streptococcus pneumoniae R6

69.497

100

0.695
  coiA Streptococcus pneumoniae TIGR4

69.182

100

0.692
  coiA Streptococcus mitis NCTC 12261

69.182

100

0.692
  coiA Lactococcus lactis subsp. cremoris KW2

42.025

100

0.431