Detailed information NTG0812106

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: P9875_RS05330
• Genome accession: NZ_CP121464
• Coordinates: 1180318..1181457 (-)
• Length: 379 a.a.
• NCBI ID: WP_278317765.1
• Uniprot ID: -
• Organism: Janthinobacterium rivuli strain DEMB2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1175318..1186457

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P9875_RS05315 (P9875_05315)	glcF	1176315..1177541 (+)	1227	WP_278317763.1	glycolate oxidase subunit GlcF	-
P9875_RS05320 (P9875_05320)	-	1177534..1179645 (-)	2112	WP_278317764.1	EAL domain-containing protein	-
P9875_RS05325 (P9875_05325)	-	1179831..1180316 (-)	486	WP_099403295.1	glutathione peroxidase	-
P9875_RS05330 (P9875_05330)	pilU	1180318..1181457 (-)	1140	WP_278317765.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
P9875_RS05335 (P9875_05335)	pilT	1181461..1182504 (-)	1044	WP_035824693.1	type IV pilus twitching motility protein PilT	Machinery gene
P9875_RS05340 (P9875_05340)	-	1182575..1183276 (+)	702	WP_099403387.1	YggS family pyridoxal phosphate-dependent enzyme	-
P9875_RS05345 (P9875_05345)	proC	1183293..1184123 (+)	831	WP_099403294.1	pyrroline-5-carboxylate reductase	-
P9875_RS05350 (P9875_05350)	-	1184127..1184843 (-)	717	WP_099403293.1	anti-sigma factor	-
P9875_RS05355 (P9875_05355)	-	1184840..1185397 (-)	558	WP_278317766.1	sigma-70 family RNA polymerase sigma factor	-
P9875_RS05360 (P9875_05360)	-	1185626..1186183 (-)	558	WP_099403291.1	DUF3455 domain-containing protein	-

Sequence

Protein

• Length: 379 a.a.
• Molecular weight: 40895.00 Da
• Isoelectric Point: 6.9060

>NTDB_id=812106 P9875_RS05330 WP_278317765.1 1180318..1181457(-) (pilU) [Janthinobacterium rivuli strain DEMB2]
MQTTHEHYGAMHALLAQMRARGGSDLFITAGFPAAIKLDGKLTPLAGGALDAQQAAGYVRAVMNARQAAEFESSREANFA
ISPEGLGRFRVSAFVQMGQAGMVLRLINTAIPTLDGLGLPAVLQDIVMSKRGLVIMVGATGCGKSTTLAAMVGHRNAHSH
GHIITIEDPVEFIHPHGNCIVTQREVGVDTDDWGTALKNTLRQAPDVIQIGEIRDRETMDHAIAFAETGHLCLATLHANN
ANQALDRIINFFPEERRQQLLMDLSLNLKGMISQRLIPGKDGGGRKAALEILLNSPLMSDLIFKGQVHEIKELMKKSREH
GMQTFDQALFDLHEAGAISYEDALRNADSVNDLRLTIKLKGATAPEPAPQAGATKLGLL

Nucleotide

• Length: 1140 bp

>NTDB_id=812106 P9875_RS05330 WP_278317765.1 1180318..1181457(-) (pilU) [Janthinobacterium rivuli strain DEMB2]
ATGCAGACGACGCACGAACACTATGGCGCCATGCACGCGCTGCTGGCGCAGATGCGCGCACGGGGCGGCTCGGACCTGTT
CATCACGGCCGGCTTTCCTGCCGCCATCAAGCTCGACGGCAAACTGACGCCGCTGGCGGGCGGCGCGCTCGATGCGCAAC
AGGCGGCCGGCTACGTGCGCGCCGTCATGAACGCGCGCCAGGCGGCCGAGTTTGAATCCAGCCGCGAAGCCAATTTCGCC
ATCAGCCCGGAGGGACTCGGGCGTTTCCGCGTGTCCGCCTTCGTGCAGATGGGCCAGGCAGGCATGGTCTTGCGATTGAT
CAATACCGCCATCCCCACCCTCGATGGGCTCGGCTTACCGGCCGTCCTGCAAGACATCGTCATGAGCAAGCGCGGCCTCG
TCATCATGGTGGGCGCCACGGGTTGCGGCAAGTCGACCACCCTGGCGGCCATGGTGGGCCACCGCAACGCGCACAGCCAT
GGCCACATCATCACCATTGAAGACCCCGTGGAATTCATCCATCCGCACGGCAACTGCATCGTTACCCAGCGCGAAGTGGG
CGTCGATACGGACGACTGGGGCACGGCCCTGAAAAACACCCTGCGCCAGGCGCCCGACGTGATACAGATCGGCGAAATCC
GCGACCGGGAGACGATGGATCACGCCATCGCGTTTGCCGAGACGGGCCATCTGTGCCTGGCGACCTTGCACGCGAACAAC
GCCAACCAGGCGCTGGACCGCATCATCAATTTCTTCCCCGAAGAGCGGCGCCAGCAGTTGCTGATGGACCTGTCGCTCAA
TTTGAAGGGCATGATTTCGCAGCGCCTGATCCCCGGCAAGGACGGCGGCGGGCGCAAGGCGGCGCTGGAAATCCTGCTCA
ACTCGCCGCTGATGAGCGACCTGATCTTCAAGGGCCAGGTACACGAAATCAAGGAATTGATGAAAAAGTCGCGCGAGCAT
GGCATGCAGACCTTCGACCAGGCCCTGTTCGACCTGCACGAAGCGGGCGCCATCAGCTATGAAGACGCGCTGCGCAATGC
GGACTCCGTCAACGACCTGCGCCTGACGATCAAACTCAAGGGCGCCACGGCGCCGGAACCGGCCCCGCAAGCGGGCGCCA
CCAAACTGGGACTCCTCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (62-276)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	63.739	93.14	0.594
pilU	Acinetobacter baylyi ADP1	59.942	91.557	0.549
pilU	Vibrio cholerae strain A1552	57.143	90.501	0.517
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.731	86.28	0.377
pilT	Pseudomonas aeruginosa PAK	41.018	88.127	0.361