Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   P9875_RS04605 Genome accession   NZ_CP121464
Coordinates   1023920..1025440 (-) Length   506 a.a.
NCBI ID   WP_278317696.1    Uniprot ID   -
Organism   Janthinobacterium rivuli strain DEMB2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1018920..1030440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9875_RS04595 (P9875_04595) - 1022785..1023129 (-) 345 WP_092716690.1 DUF1840 domain-containing protein -
  P9875_RS04600 (P9875_04600) - 1023310..1023855 (-) 546 WP_278317695.1 hypothetical protein -
  P9875_RS04605 (P9875_04605) comM 1023920..1025440 (-) 1521 WP_278317696.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  P9875_RS04610 (P9875_04610) - 1025555..1025803 (-) 249 WP_035824443.1 accessory factor UbiK family protein -
  P9875_RS04615 (P9875_04615) - 1026074..1026841 (+) 768 WP_278317697.1 TorF family putative porin -
  P9875_RS04620 (P9875_04620) - 1026853..1027191 (+) 339 WP_010393464.1 P-II family nitrogen regulator -
  P9875_RS04625 (P9875_04625) amt 1027203..1028738 (+) 1536 WP_278317698.1 ammonium transporter -
  P9875_RS04630 (P9875_04630) gshA 1028943..1030241 (+) 1299 WP_034784679.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54543.52 Da        Isoelectric Point: 8.7437

>NTDB_id=812104 P9875_RS04605 WP_278317696.1 1023920..1025440(-) (comM) [Janthinobacterium rivuli strain DEMB2]
MSLAVLKSRALSGMEAPEVSVEVHLANGLPSFTIVGLPDTEVKESRDRVRAALQNCGFEMPARRITANLAPADLPKESGR
FDLPIALGILAASGQLPGDQLHHYEFAGELSLSGQLRPIRGALAMTFAMQRSQSGAPRAFILPRANADEAALVNDACIYP
AHSLLEVCAHFAAHASQTALQRHQPVLAAHAFPYPDFADVQGQQQARRALEVAAAGGHNVLMIGPPGAGKTMLASRFPGV
LPPMSDEEALESAAVHSLGGHFKVEHWKRRPYRAPHQTASGVALVGGGNVPRPGEISLAHCGVLFLDEIAEFQRRVLDVL
RQPMESGVISISRAARQAEFPARFQLIAAMNPCPCGYLGHASGRCRCTPDAVLRYHNRLSGPLLDRIDLQIEVAAMPPAA
LGRRAGAGESTQAIATRVAAAYALQLARQGKTNQRLSNTEIEQHCRLETHGEQLLHGAMTRLHWSARTYHRVLRVARSIA
DLAGSPAITPPHVAEAIQYRRVLREI

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=812104 P9875_RS04605 WP_278317696.1 1023920..1025440(-) (comM) [Janthinobacterium rivuli strain DEMB2]
ATGAGTCTGGCAGTCCTTAAAAGCCGCGCCCTGTCCGGCATGGAGGCGCCCGAGGTAAGTGTCGAAGTCCACCTTGCCAA
TGGTTTGCCGTCCTTTACGATTGTCGGCCTGCCGGATACGGAAGTAAAAGAATCGCGCGACCGCGTGCGTGCCGCGTTGC
AAAACTGCGGCTTTGAGATGCCGGCGCGGCGCATCACGGCCAATCTGGCGCCGGCCGACCTGCCCAAGGAATCGGGCCGC
TTCGACCTGCCCATTGCGCTGGGCATCCTGGCCGCCTCCGGCCAGTTGCCGGGCGACCAATTACACCACTATGAATTCGC
GGGTGAACTGTCGCTGTCGGGACAACTACGTCCCATCCGTGGCGCGCTGGCCATGACCTTTGCCATGCAGCGCAGCCAGT
CGGGCGCACCACGCGCCTTCATCCTGCCGCGGGCAAACGCGGACGAGGCCGCTCTCGTCAACGATGCCTGCATCTATCCC
GCCCACAGCCTGCTCGAGGTCTGCGCGCATTTTGCTGCGCACGCCAGCCAGACGGCCTTGCAACGCCACCAGCCCGTGCT
GGCGGCGCACGCTTTTCCCTATCCCGACTTTGCCGATGTGCAAGGGCAGCAGCAAGCGCGACGGGCGCTGGAAGTGGCGG
CGGCAGGCGGCCATAACGTCCTGATGATTGGCCCTCCAGGCGCAGGCAAGACCATGCTGGCCAGCCGCTTCCCCGGCGTG
CTGCCGCCCATGAGCGATGAAGAGGCGCTGGAATCGGCTGCCGTGCATTCGCTGGGCGGCCACTTCAAGGTGGAGCACTG
GAAACGGCGCCCCTATCGCGCGCCGCATCAGACGGCGTCCGGCGTAGCCCTGGTGGGCGGCGGCAACGTGCCGCGGCCTG
GCGAAATCTCGCTGGCCCACTGCGGCGTGCTGTTTCTCGACGAAATTGCCGAATTCCAGCGCCGGGTGCTCGATGTCTTG
CGCCAGCCCATGGAATCGGGTGTGATCAGCATTTCACGGGCGGCCCGCCAGGCCGAGTTTCCCGCCCGTTTTCAATTGAT
CGCCGCCATGAATCCCTGCCCGTGCGGCTATCTGGGCCACGCTTCCGGCCGTTGCCGCTGCACGCCAGACGCCGTGCTCC
GTTATCACAATCGCCTGTCCGGCCCGCTGCTCGACCGTATCGACCTGCAAATTGAAGTGGCCGCCATGCCGCCCGCGGCG
CTGGGGCGGCGTGCCGGCGCCGGCGAAAGCACGCAAGCCATCGCCACGCGGGTAGCGGCAGCCTATGCCCTGCAGCTGGC
ACGCCAGGGAAAAACGAACCAGCGGCTGAGCAACACGGAAATCGAACAGCATTGTCGGCTGGAAACGCATGGCGAACAGT
TGCTGCATGGCGCCATGACGCGATTGCACTGGTCCGCGCGCACTTACCACCGGGTATTGCGCGTGGCGCGCAGCATCGCG
GACCTGGCGGGTAGCCCGGCCATCACACCGCCACATGTCGCCGAAGCGATCCAGTACCGGCGCGTGCTGCGTGAAATATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(196-397)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-500)

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.012

100

0.545
  comM Vibrio cholerae strain A1552

53.137

100

0.536
  comM Glaesserella parasuis strain SC1401

52.756

100

0.53
  comM Haemophilus influenzae Rd KW20

50.784

100

0.512
  comM Legionella pneumophila str. Paris

48.515

99.802

0.484
  comM Legionella pneumophila strain ERS1305867

48.515

99.802

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.99

100

0.453