Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   OCUAC_RS18185 Genome accession   NZ_AP023077
Coordinates   3797890..3799020 (+) Length   376 a.a.
NCBI ID   WP_072689892.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OCU_Ac16a     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3792890..3804020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAC_RS18160 - 3793150..3793356 (-) 207 WP_000182542.1 hypothetical protein -
  OCUAC_RS18165 - 3793410..3795524 (-) 2115 WP_032043964.1 TonB-dependent copper receptor -
  OCUAC_RS18170 - 3795597..3796025 (-) 429 WP_072689890.1 DUF2946 family protein -
  OCUAC_RS18175 def 3796062..3796592 (-) 531 WP_001196539.1 peptide deformylase -
  OCUAC_RS18180 tsaP 3796715..3797869 (+) 1155 WP_032061702.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  OCUAC_RS18185 dprA 3797890..3799020 (+) 1131 WP_072689892.1 DNA-processing protein DprA Machinery gene
  OCUAC_RS18190 - 3799071..3799640 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  OCUAC_RS18195 - 3800032..3800952 (-) 921 WP_000084546.1 DMT family transporter -
  OCUAC_RS18200 - 3801058..3801708 (-) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -
  OCUAC_RS18205 - 3801845..3803059 (+) 1215 WP_072689888.1 MFS transporter -
  OCUAC_RS18210 - 3803081..3803845 (+) 765 WP_000786955.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41918.42 Da        Isoelectric Point: 6.5418

>NTDB_id=81191 OCUAC_RS18185 WP_072689892.1 3797890..3799020(+) (dprA) [Acinetobacter baumannii strain OCU_Ac16a]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTTQGQAQFEQLVQQV
RQHTDFILTTDDSGYPSQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEYILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWIGQNIDQLVIHHNVPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=81191 OCUAC_RS18185 WP_072689892.1 3797890..3799020(+) (dprA) [Acinetobacter baumannii strain OCU_Ac16a]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGACCCAAGGTCAGGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACGGATTTTATTTTAACGACAGATGACTCAGGCTACCCCTCTCAATTACTTCCTTATACAGATCACCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCGATTGTCGGTAGCCGAAAGCCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCCTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGCGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTGCTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAATATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATTCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATCTGATTGACCTTTATCAGTCTTTAGACTGGATAGGACAAAATATTGACCAGCTTGTAATTCATCATAATGTGCC
GGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

98.404

100

0.984

  dprA Acinetobacter baumannii strain A118

97.074

100

0.971

  dprA Acinetobacter baylyi ADP1

70.341

100

0.713

  dprA Vibrio cholerae strain A1552

42.9

88.032

0.378


Multiple sequence alignment