Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   OCUAC_RS18180 Genome accession   NZ_AP023077
Coordinates   3796715..3797869 (+) Length   384 a.a.
NCBI ID   WP_032061702.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OCU_Ac16a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3791715..3802869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAC_RS18155 - 3791866..3793080 (+) 1215 WP_001177956.1 oxygenase MpaB family protein -
  OCUAC_RS18160 - 3793150..3793356 (-) 207 WP_000182542.1 hypothetical protein -
  OCUAC_RS18165 - 3793410..3795524 (-) 2115 WP_032043964.1 TonB-dependent copper receptor -
  OCUAC_RS18170 - 3795597..3796025 (-) 429 WP_072689890.1 DUF2946 family protein -
  OCUAC_RS18175 def 3796062..3796592 (-) 531 WP_001196539.1 peptide deformylase -
  OCUAC_RS18180 tsaP 3796715..3797869 (+) 1155 WP_032061702.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  OCUAC_RS18185 dprA 3797890..3799020 (+) 1131 WP_072689892.1 DNA-processing protein DprA Machinery gene
  OCUAC_RS18190 - 3799071..3799640 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  OCUAC_RS18195 - 3800032..3800952 (-) 921 WP_000084546.1 DMT family transporter -
  OCUAC_RS18200 - 3801058..3801708 (-) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42351.26 Da        Isoelectric Point: 8.2461

>NTDB_id=81190 OCUAC_RS18180 WP_032061702.1 3796715..3797869(+) (tsaP) [Acinetobacter baumannii strain OCU_Ac16a]
MKKVFDGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=81190 OCUAC_RS18180 WP_032061702.1 3796715..3797869(+) (tsaP) [Acinetobacter baumannii strain OCU_Ac16a]
ATGAAAAAGGTTTTTGACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTGAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGTGACGGCTGTGTCGGTATTATCCGTCGCTATACAGGTCAAACCACAAACC
TGCAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGCTACTACAGGTTGCTTCAGGTGTTGCGGTCTCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAACAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACTCAGGGCATTCAAGTAGGTCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

99.219

100

0.992

Multiple sequence alignment