Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OF512_RS34715 Genome accession   NZ_CP121215
Coordinates   7714745..7715230 (-) Length   161 a.a.
NCBI ID   WP_063182415.1    Uniprot ID   -
Organism   Paenibacillus elgii strain L146     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 7710730..7724494 7714745..7715230 within 0


Gene organization within MGE regions


Location: 7710730..7724494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OF512_RS34690 - 7710730..7711665 (-) 936 WP_231884755.1 DUF2232 domain-containing protein -
  OF512_RS34695 - 7711662..7711973 (-) 312 WP_010501566.1 MazG-like family protein -
  OF512_RS34700 - 7712022..7712438 (-) 417 WP_063182411.1 CBS domain-containing protein -
  OF512_RS34705 - 7712594..7714306 (-) 1713 WP_127462031.1 DUF4091 domain-containing protein -
  OF512_RS34710 rpsR 7714419..7714700 (-) 282 WP_127462026.1 30S ribosomal protein S18 -
  OF512_RS34715 ssbA 7714745..7715230 (-) 486 WP_063182415.1 single-stranded DNA-binding protein Machinery gene
  OF512_RS34720 rpsF 7715313..7715597 (-) 285 WP_036691811.1 30S ribosomal protein S6 -
  OF512_RS34725 - 7715838..7716023 (+) 186 WP_036691808.1 YjzC family protein -
  OF512_RS34730 - 7716102..7716356 (+) 255 WP_063182422.1 hypothetical protein -
  OF512_RS34735 - 7716526..7716840 (-) 315 WP_127462027.1 hypothetical protein -
  OF512_RS34740 - 7717011..7717277 (+) 267 WP_063182425.1 helix-turn-helix domain-containing protein -
  OF512_RS35220 - 7717314..7717409 (+) 96 WP_082866975.1 helix-turn-helix domain-containing protein -
  OF512_RS34755 - 7717699..7717932 (-) 234 WP_010502202.1 DUF951 domain-containing protein -
  OF512_RS34760 - 7717932..7718831 (-) 900 WP_063182426.1 mechanosensitive ion channel family protein -
  OF512_RS34765 - 7718846..7719088 (-) 243 WP_029192024.1 DUF3343 domain-containing protein -
  OF512_RS34770 yyaC 7719217..7719831 (+) 615 WP_127462028.1 spore protease YyaC -
  OF512_RS34775 - 7719806..7720300 (-) 495 WP_063182428.1 DUF4446 family protein -
  OF512_RS34780 - 7720321..7721475 (-) 1155 WP_063182429.1 aminotransferase class V-fold PLP-dependent enzyme -
  OF512_RS34785 - 7721579..7722439 (-) 861 WP_063182430.1 ParB/RepB/Spo0J family partition protein -
  OF512_RS34790 - 7722436..7723194 (-) 759 WP_063182432.1 ParA family protein -
  OF512_RS34795 noc 7723673..7724494 (-) 822 WP_063182434.1 nucleoid occlusion protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17597.41 Da        Isoelectric Point: 4.8013

>NTDB_id=811232 OF512_RS34715 WP_063182415.1 7714745..7715230(-) (ssbA) [Paenibacillus elgii strain L146]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFTSNQGQREADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYDNNEGRRVYVTEIIADNVRFLESANSANREDSGMGMSGGGGGGNSGGGNRGGYGGGREQQDPFQDDGRPIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=811232 OF512_RS34715 WP_063182415.1 7714745..7715230(-) (ssbA) [Paenibacillus elgii strain L146]
ATGTTGAATCGTGTAATTCTGATCGGAAGGCTGACACGTGATCCCGAATTACGTTATACGCCGGCAGGTGTGGCTGTAAC
CCAGTTTACGCTTGCGGTAGACCGCCCCTTCACAAGCAACCAAGGGCAGCGGGAAGCGGATTTCATTCCGGTCGTAACTT
GGCGCCAGCTTGCAGAGACTTGCGCAAACTACCTTCGCAAAGGGCGTTTGGCTGCAGTCGAAGGCCGTATTCAAGTACGT
AACTATGACAACAATGAAGGCCGTCGCGTCTATGTGACGGAGATCATTGCGGACAATGTGCGTTTCTTGGAATCTGCTAA
CAGCGCAAACCGTGAAGATAGCGGTATGGGCATGAGCGGCGGTGGTGGCGGTGGCAACAGTGGCGGCGGGAACCGCGGAG
GCTACGGCGGAGGACGCGAACAACAGGATCCTTTCCAGGATGACGGCAGACCGATCGACATTTCCGATGATGATTTGCCG
TTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.59
  ssb Latilactobacillus sakei subsp. sakei 23K

47.953

100

0.509
  ssb Glaesserella parasuis strain SC1401

30.851

100

0.36
  ssb Neisseria meningitidis MC58

37.662

95.652

0.36
  ssb Neisseria gonorrhoeae MS11

37.662

95.652

0.36