Detailed information    

insolico Bioinformatically predicted

Overview

Name   stkP/pknB   Type   Regulator
Locus tag   P7Y79_RS07110 Genome accession   NZ_CP121207
Coordinates   1470250..1472139 (-) Length   629 a.a.
NCBI ID   WP_039695889.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_77-47     
Function   activate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1465250..1477139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7Y79_RS07085 (P7Y79_07085) - 1465926..1466282 (-) 357 WP_020916316.1 S1 RNA-binding domain-containing protein -
  P7Y79_RS07090 (P7Y79_07090) - 1466282..1467682 (-) 1401 WP_081341909.1 Cof-type HAD-IIB family hydrolase -
  P7Y79_RS07095 (P7Y79_07095) - 1467807..1468451 (-) 645 WP_074626744.1 response regulator transcription factor -
  P7Y79_RS07100 (P7Y79_07100) - 1468435..1469460 (-) 1026 WP_157628769.1 sensor histidine kinase -
  P7Y79_RS07105 (P7Y79_07105) liaF 1469457..1470152 (-) 696 WP_039695888.1 cell wall-active antibiotics response protein LiaF -
  P7Y79_RS07110 (P7Y79_07110) stkP/pknB 1470250..1472139 (-) 1890 WP_039695889.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  P7Y79_RS07115 (P7Y79_07115) - 1472139..1472876 (-) 738 WP_039695890.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  P7Y79_RS07120 (P7Y79_07120) rsmB 1472914..1474236 (-) 1323 WP_157628767.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  P7Y79_RS07125 (P7Y79_07125) fmt 1474226..1475161 (-) 936 WP_074561288.1 methionyl-tRNA formyltransferase -

Sequence

Protein


Download         Length: 629 a.a.        Molecular weight: 68128.02 Da        Isoelectric Point: 6.7917

>NTDB_id=811114 P7Y79_RS07110 WP_039695889.1 1470250..1472139(-) (stkP/pknB) [Streptococcus ruminicola strain CNU_77-47]
MIQIGKLFAGRYRILKSIGRGGMADVYLAKDLILDNEEVAIKVLRTNYQTDQIAVARFQREARAMAELNHPNIVSIRDIG
EEDGQQFLVMEYVDGSDLKKYIQDHAPLSNNEVVRIMEEVLSAMTLAHQQGIVHRDLKPQNILLTKDGTVKVTDFGIAVA
FAETSLTQTNSMLGSVHYLSPEQARGSKATVQSDIYAMGIMLFEMLTGHIPYDGDSAVTIALQHFQKPLPSIIDENKNVP
QALENVVIKATAKRLSDRYASTFEMSRDLMTALSYNRSRERKLVFEDTENTKTLPKVTTSTPVPSTTEQLLKKQKAAKVN
REAADNKIAKAKTKKKKSHRMFGTLVKIFFAVVVVAIAIFTYLTLSTPASVNVPDVAGTSLADAKTSLTSAGLKVGDIHK
VASDTVQKGHVIKTDPTAGSSKKEGAKVDIYVSKGTSGFKMKDYTGQNYQEVIKELKDKHGISSDKIDVEWITGTNYDGG
TIISQTPGKGTKVASEDKITFKVAAIVMPNLIGYTYQDAIAELTALGLSSSHITVFQADATSSTGYSQVKTPSASAVVVA
QDPYFGAAIEGNVKLYFSAGSESQSSEVAPSQSVPESSETSETSESSSSSSSSSSTEESSQTDSSSVEQ

Nucleotide


Download         Length: 1890 bp        

>NTDB_id=811114 P7Y79_RS07110 WP_039695889.1 1470250..1472139(-) (stkP/pknB) [Streptococcus ruminicola strain CNU_77-47]
ATGATTCAGATTGGCAAATTATTTGCTGGTCGTTATCGGATCCTCAAATCTATCGGACGGGGTGGAATGGCAGATGTTTA
TCTTGCCAAAGATCTAATTCTTGATAATGAAGAAGTGGCTATCAAAGTCCTTCGAACTAATTATCAAACAGATCAAATTG
CCGTTGCTCGTTTCCAACGTGAAGCGCGTGCCATGGCAGAGCTAAACCATCCAAATATCGTTTCGATTCGTGATATTGGA
GAAGAAGACGGACAGCAATTCTTAGTAATGGAATATGTTGATGGTTCGGACTTGAAAAAATACATTCAAGACCATGCCCC
GCTTTCTAATAATGAAGTTGTTAGAATCATGGAAGAAGTCTTGTCTGCAATGACTTTGGCTCATCAACAAGGAATTGTTC
ACCGTGATTTGAAACCACAAAATATCTTGTTAACCAAAGACGGAACGGTTAAAGTTACCGACTTTGGTATCGCTGTAGCC
TTTGCAGAAACAAGTTTAACACAGACAAACTCAATGCTTGGTAGTGTACACTATTTATCACCTGAACAAGCGCGTGGATC
AAAAGCCACTGTTCAAAGTGATATCTACGCTATGGGGATTATGTTGTTTGAAATGTTGACTGGTCACATCCCATATGATG
GTGATTCAGCTGTTACAATTGCTCTTCAACATTTCCAAAAACCACTTCCATCAATCATTGATGAAAATAAAAATGTTCCA
CAAGCTTTGGAAAATGTGGTCATTAAAGCAACTGCAAAACGTTTGAGTGATCGCTACGCCTCAACTTTTGAGATGAGCCG
TGATTTAATGACTGCTCTTTCATATAATCGCAGTCGTGAACGCAAACTTGTCTTTGAAGATACAGAAAATACGAAGACAC
TTCCAAAAGTAACAACTTCAACACCTGTTCCCTCAACTACGGAACAATTGTTGAAAAAACAAAAAGCGGCTAAAGTTAAT
CGTGAAGCTGCGGATAATAAAATTGCAAAAGCGAAAACGAAGAAGAAAAAATCACATCGTATGTTTGGTACTTTAGTGAA
AATTTTCTTTGCGGTCGTAGTAGTTGCAATTGCTATCTTTACTTACTTGACGCTAAGCACACCAGCTTCAGTCAACGTTC
CAGATGTAGCAGGAACAAGTTTAGCAGATGCTAAGACAAGTTTAACTTCAGCTGGACTTAAAGTTGGTGATATTCATAAA
GTAGCTAGTGATACTGTGCAAAAAGGTCATGTTATTAAGACTGACCCAACAGCAGGTTCATCTAAAAAAGAAGGTGCCAA
AGTTGACATTTATGTGTCAAAAGGAACATCAGGCTTTAAGATGAAAGATTATACTGGTCAAAACTATCAAGAAGTTATCA
AAGAACTCAAAGATAAGCACGGTATTTCAAGTGATAAGATTGATGTTGAATGGATAACAGGTACTAACTATGACGGTGGT
ACTATCATTAGTCAAACACCTGGAAAAGGTACAAAAGTAGCTAGTGAAGATAAGATTACTTTCAAGGTTGCAGCAATCGT
TATGCCAAACCTTATTGGTTATACTTATCAAGATGCAATTGCTGAATTGACTGCACTTGGCTTATCAAGCTCACATATTA
CAGTATTCCAAGCAGATGCTACTTCATCAACTGGATACTCTCAAGTCAAAACACCATCTGCCTCTGCAGTTGTTGTGGCA
CAAGATCCTTACTTTGGCGCAGCTATTGAAGGAAATGTGAAACTTTACTTCTCAGCTGGAAGTGAATCTCAGTCTTCAGA
AGTCGCACCATCTCAATCTGTTCCTGAGTCATCTGAGACAAGTGAAACTAGTGAGTCAAGTTCTTCAAGTAGCAGCAGTA
GCAGCACTGAAGAAAGTTCACAAACCGACTCATCATCAGTTGAACAATAA

Domains

Predicted by InterproScan.

PASTA domain (PASTA)

(440-503)

PASTA domain (PASTA)

(507-578)

PASTA domain (PASTA)

(371-434)

Protein kinase domain (Pkinase)

(12-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  stkP/pknB Streptococcus salivarius strain HSISS4

61.022

99.523

0.607
  pknB Streptococcus mutans UA159

66.025

90.779

0.599
  stkP Streptococcus pneumoniae TIGR4

58.757

84.42

0.496
  stkP Streptococcus pneumoniae D39

58.569

84.42

0.494
  stkP Streptococcus pneumoniae R6

58.569

84.42

0.494
  stkP Streptococcus pneumoniae Rx1

58.38

84.42

0.493