Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   P7Y79_RS00990 Genome accession   NZ_CP121207
Coordinates   211337..212719 (+) Length   460 a.a.
NCBI ID   WP_278007568.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_77-47     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 206337..217719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7Y79_RS00960 (P7Y79_00960) - 207052..208377 (+) 1326 WP_157327340.1 GHKL domain-containing protein -
  P7Y79_RS00965 (P7Y79_00965) comC/comC1 208400..208552 (-) 153 WP_157327338.1 hypothetical protein Regulator
  P7Y79_RS00970 (P7Y79_00970) - 208814..208963 (+) 150 WP_278007565.1 bacteriocin -
  P7Y79_RS00975 (P7Y79_00975) - 208976..209281 (+) 306 WP_158914537.1 bacteriocin immunity protein -
  P7Y79_RS00980 (P7Y79_00980) - 209309..209431 (+) 123 WP_278007566.1 hypothetical protein -
  P7Y79_RS00985 (P7Y79_00985) comD/comD2 210393..211340 (+) 948 WP_278007567.1 GHKL domain-containing protein Regulator
  P7Y79_RS00990 (P7Y79_00990) comD/comD3 211337..212719 (+) 1383 WP_278007568.1 GHKL domain-containing protein Regulator
  P7Y79_RS00995 (P7Y79_00995) comE/comE2 213380..214114 (+) 735 WP_052071091.1 LytTR family DNA-binding domain-containing protein Regulator
  P7Y79_RS01005 (P7Y79_01005) rsgA 214432..215304 (+) 873 WP_006531894.1 ribosome small subunit-dependent GTPase A -
  P7Y79_RS01010 (P7Y79_01010) rpe 215311..215973 (+) 663 WP_006531895.1 ribulose-phosphate 3-epimerase -
  P7Y79_RS01015 (P7Y79_01015) - 215966..216598 (+) 633 WP_278007569.1 thiamine diphosphokinase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 52946.16 Da        Isoelectric Point: 6.7582

>NTDB_id=811079 P7Y79_RS00990 WP_278007568.1 211337..212719(+) (comD/comD3) [Streptococcus ruminicola strain CNU_77-47]
MIEIIRFIITVLLNFFGYIIIGFLFQQITKTKIALLEWCAIIMFVQIGSIAFGVLAGNTLKIGLLVIKDIVIILGFMLIS
YRHNPKLEIRYHIFYALYPINLYMILHEVYCYIIFAIFSIQLTSLTMTSPSVGKMIGMITAVIIPPIFYYLISKWLNIDI
SNVRKTLKNYLSARALRFVNVLLLLFYPGMECFGAIAPFEKMSMNRNIYRAVIFIYFILLFIFLFYLNFRHGQEQKNELL
RNQEMELAALENYSKHVESLYQEVRSFRHDYANILMSLKVGIDQGNLDDIKKIYDEITADSTKLVKNNKFDLTRLANITD
SGVKSLMSAKFLQAENQGIAISLEVAEKMGNPSIPLISYIRILSILFDNAIEAALESAEPRISVANFYQDDEFVFMIENS
TKEKSVDLGKIFERGYSTKGENRGLGLATLMDFQDDYENLSVETRSSDYTFTQVVRIYEA

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=811079 P7Y79_RS00990 WP_278007568.1 211337..212719(+) (comD/comD3) [Streptococcus ruminicola strain CNU_77-47]
ATGATTGAGATTATTAGATTTATTATTACAGTTCTTTTGAATTTTTTTGGATATATCATAATAGGTTTTCTTTTCCAACA
AATAACTAAAACTAAGATAGCCCTCCTTGAGTGGTGTGCAATAATAATGTTTGTTCAAATTGGGTCGATTGCTTTTGGTG
TTTTAGCTGGTAATACTTTAAAGATAGGATTATTAGTTATAAAAGATATTGTCATTATTTTAGGTTTTATGCTGATATCA
TATAGACATAATCCAAAATTAGAAATCAGATATCACATTTTTTATGCCTTGTATCCAATTAATCTTTATATGATTCTACA
CGAAGTTTATTGTTATATTATATTTGCAATTTTTTCAATACAATTGACCTCACTTACAATGACTTCACCATCAGTAGGAA
AAATGATTGGTATGATAACTGCAGTTATTATTCCACCAATTTTTTACTATCTAATATCAAAGTGGCTTAACATTGATATT
TCAAATGTCAGAAAAACGCTCAAGAATTATCTTAGTGCAAGAGCGCTTAGATTTGTTAATGTATTATTACTACTTTTCTA
TCCAGGAATGGAATGTTTTGGTGCCATAGCCCCTTTTGAGAAAATGTCGATGAATAGAAATATTTATAGGGCTGTTATTT
TTATCTACTTCATTCTTCTTTTTATTTTCCTCTTTTATCTCAATTTCCGTCATGGACAAGAGCAGAAAAATGAATTGCTT
CGCAATCAGGAGATGGAATTGGCGGCCTTGGAAAATTATAGCAAACACGTGGAAAGCCTTTATCAAGAAGTGCGCAGTTT
CAGGCATGACTACGCTAATATTCTGATGAGTTTAAAGGTTGGAATTGATCAAGGCAATCTTGATGACATCAAGAAAATTT
ACGACGAAATCACGGCCGATTCGACGAAACTGGTCAAAAATAATAAATTTGACTTGACTCGTTTGGCTAACATCACAGAC
AGCGGCGTCAAAAGTCTCATGTCAGCCAAATTCTTGCAAGCTGAAAATCAAGGGATTGCGATTAGCTTGGAAGTTGCTGA
AAAAATGGGAAATCCTAGCATTCCATTGATTTCCTACATCCGAATTTTGTCAATTTTGTTTGACAATGCCATAGAAGCCG
CTTTGGAGTCTGCGGAGCCAAGAATCTCAGTCGCTAATTTTTACCAAGATGATGAGTTTGTTTTTATGATTGAAAATTCA
ACTAAGGAGAAATCAGTGGATTTAGGCAAGATTTTTGAGCGAGGTTACTCAACCAAGGGTGAAAATCGTGGCCTTGGTCT
GGCAACACTGATGGATTTCCAAGATGACTACGAAAATCTGTCGGTTGAAACCCGCAGTTCAGATTACACATTCACACAAG
TAGTGAGGATATATGAGGCGTAA

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(360-457)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

88.261

100

0.883
  comD/comD2 Streptococcus equinus JB1

80.449

67.826

0.546