Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HT081_RS08005 Genome accession   NZ_AP023073
Coordinates   1561686..1563182 (-) Length   498 a.a.
NCBI ID   WP_012503875.1    Uniprot ID   A0AA44U6P6
Organism   Neisseria gonorrhoeae strain TUM15753     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1556686..1568182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT081_RS07970 (TUM15753C_15540) mraZ 1556794..1557249 (-) 456 WP_003689463.1 division/cell wall cluster transcriptional repressor MraZ -
  HT081_RS07975 (TUM15753C_15550) - 1557528..1558775 (+) 1248 WP_010951292.1 class I SAM-dependent methyltransferase -
  HT081_RS07990 (TUM15753C_15560) - 1559216..1560037 (-) 822 WP_003689465.1 undecaprenyl-diphosphate phosphatase -
  HT081_RS07995 (TUM15753C_15570) dsbA1 1560070..1560714 (-) 645 WP_047918176.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  HT081_RS08000 (TUM15753C_15580) ftsN 1560717..1561580 (-) 864 WP_010360712.1 cell division protein FtsN -
  HT081_RS08005 (TUM15753C_15590) comM 1561686..1563182 (-) 1497 WP_012503875.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HT081_RS08010 (TUM15753C_15600) - 1563196..1563516 (-) 321 WP_002216505.1 accessory factor UbiK family protein -
  HT081_RS08015 (TUM15753C_15610) putP 1564005..1565531 (+) 1527 WP_003689473.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53329.33 Da        Isoelectric Point: 6.8963

>NTDB_id=81090 HT081_RS08005 WP_012503875.1 1561686..1563182(-) (comM) [Neisseria gonorrhoeae strain TUM15753]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGR
FDLPIAIGILAASGQVAPEKLAEYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
GEVAAHLNGIEPLAQTECSVPQMPSEHGGQPDLCDVKGQHSARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
AEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASAAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSASVLERVIAARGKQYARQGKVNAALSVSELDSQACIQKEAQEALGSLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=81090 HT081_RS08005 WP_012503875.1 1561686..1563182(-) (comM) [Neisseria gonorrhoeae strain TUM15753]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCCTTGAGCGGTATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCCTGCCGCATTTCAACATCGTCGGACTGCCCGATACGGAAGTAAAGGAAAGCCGCGACCGCGTCCGTGCCGCCATTA
TTCAAAGCGGTTTTGAATTCCCCGCCAAAAAAATCACCGTCAACCTCGCCCCTGCCGACCTGCCCAAAGAGTCGGGGCGT
TTCGATTTGCCGATTGCAATCGGCATCCTTGCCGCATCGGGGCAGGTTGCACCCGAAAAGCTGGCGGAATACGAGTTTGC
GGGGGAATTGGCACTGTCGGGGTTGTTGCGCCCCGTGCGCGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCAAAAC
GTGCATTTGTTTTGCCTGAAGAAAACGCAGGACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGCGCGCGCTCTTTG
GGCGAAGTCGCCGCTCATTTGAACGGTATCGAACCTTTGGCGCAAACCGAATGTTCCGTACCGCAAATGCCGTCTGAACA
TGGCGGACAACCTGATTTGTGTGATGTGAAAGGTCAGCACTCTGCCCGCCTTGCTTTGGAAATCGCCGCCGCAGGCGGAC
ACAGCCTCTTGATGATGGGCCCGCCGGGAACAGGCAAGTCTATGCTCTCCCAACGCCTGCCCGGCATCCTGCCGCCGCTG
GCCGAAGACGAATTGGTAGAAGTTTGGGCATTGCGTTCGCTCCTGCCCAACCACCAACAACAACTCGACAGCAACCGTCC
TTTCCGCAGTCCGCATCACAGCGCCAGCGCGGCGGCTATGGTCGGCGGCGGCTCGGATCCGCGTCCGGGCGAGATTTCAT
TGGCGCATCACGGCGTTTTATTTTTGGACGAATTGCCCGAGTTCGACCGCAAAGTTTTGGAGGTTTTGCGCGAACCGTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGGCGCGCCAAGCCGTCTATCCCGCCAAATTCCAGCTTGTCGCTGCCATGAA
CCCGTGTCCGTGCGGTTATCTCGGGCATCCCGTCAAACCCTGCCGCTGCACGCCCGAAAGTGTCGCGCGTTACCGAAGCA
AAATTTCCGGTCCGCTGCTCGACCGCATCGATTTGACCATCGAAGTCCCCAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCGGGCGAAAGCAGTGCGTCCGTTTTGGAACGCGTCATCGCCGCCCGCGGCAAACAATACGCACGGCAGGGCAAAGT
CAACGCCGCTTTGAGCGTCAGCGAACTCGATTCCCAAGCCTGCATCCAAAAAGAAGCGCAGGAAGCCTTGGGTAGCCTGC
TGGAAAAATTGTCTCTTTCCGCCCGCAGCTTCCACCGCATTATGCGCGTGGCGCGTACATTGGCGGATTTGGCGGGCGAT
GAAGAAGTCGGCAGAAGCCACGTCATGAAAGCCATAGGCTTCCGTCGTGCTTTATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.386

100

0.538
  comM Vibrio campbellii strain DS40M4

52.113

99.799

0.52
  comM Haemophilus influenzae Rd KW20

49.499

100

0.496
  comM Glaesserella parasuis strain SC1401

48.81

100

0.494
  comM Legionella pneumophila str. Paris

46.733

100

0.474
  comM Legionella pneumophila strain ERS1305867

46.733

100

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.545

100

0.43

Multiple sequence alignment